Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq9 205 1e-47 seq3095 174 2e-38 seq748 131 2e-25 seq1688 118 1e-21 >seq9 Length=772998 Score = 205 bits (226), Expect = 1e-47 Identities = 335/480 (70%), Gaps = 22/480 (5%) Strand=Plus/Plus Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 ||||| || | ||| || ||||| ||||||||||||||||||||| | | ||| || | | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 || |||| ||||||||| | || || | |||||| | ||||||||| |||||||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | ||| || | |||||| ||||| || || || || ||||| || | ||| ||| Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCT 68021 ||||||||| ||||||| |||| | || ||||||||||| |||||| | | | ||| Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828 Query 68022 GTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCAC 68081 | || | | |||||| | || | || | |||| |||||||| || ||||| Sbjct 515829 ---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAT 515885 Query 68082 TCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTA 68141 ||||| |||| ||| |||||| || || || || || | || | ||| Sbjct 515886 TCATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT------- 515933 Query 68142 GGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCT 68201 |||| || |||||||| || || ||||| || || | | ||||| || ||| || Sbjct 515934 GGAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCA 515993 Query 68202 CTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGA--AGCAAGTTG 68259 |||||||| ||||| | |||| ||||| ||||| || || || | || |||||| Sbjct 515994 TGAATACCATCAATATCTATTGGA--AGCTGCGATGAAGGCGATAATAAATAGGAAGTTG 516051 >seq3095 Length=35243 Score = 174 bits (192), Expect = 2e-38 Identities = 300/434 (69%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 67881 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGAC 67940 || ||||| ||| |||||||| | ||| | | |||||| ||||| || || | Sbjct 20266 GCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCA 20207 Query 67941 ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCC 68000 || ||||| || ||||| ||| ||||||||||||||||| |||||| || ||||||| Sbjct 20206 ACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCC 20147 Query 68001 CACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGG 68057 |||| |||||| | | | ||| | || | | |||||| | || | || | Sbjct 20146 CACTCACGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 20090 Query 68058 AAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAG 68117 |||| || ||||| || ||||||||||| | || ||| ||||||||| | || ||| Sbjct 20089 TAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTAAAAG 20034 Query 68118 TGAAGACCGATTGCGTTTGAACTAGG----AACAACAGCACCAGAAATGATGT-----TG 68168 || | ||||| || ||| |||| || || |||||||| || || | || Sbjct 20033 TGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTG 19974 Query 68169 TTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGT 68228 || || || | | ||||| | |||||| || | |||||||| ||||| |||||||| Sbjct 19973 TTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGG 19914 Query 68229 GCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAAC 68288 || || ||||| || || || || || | ||| | | ||| ||| |||||||| Sbjct 19913 GCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 19854 Query 68289 ACACCGAACCAACC 68302 ||||||||||| || Sbjct 19853 ACACCGAACCATCC 19840 >seq748 Length=127770 Score = 131 bits (144), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 ||||| || || |||| | | ||| || || | |||| ||||||||||| || || Sbjct 126526 TCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCACTGAATAG- 126584 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 ||||| ||||||||||| ||||| || | || || ||||| ||| |||||||||||||| Sbjct 126585 GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTGC 126644 Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCA 67886 | ||| ||||| || | ||| |||| ||||||||||| || || | || ||| | | | Sbjct 126645 TGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATTA 126704 Query 67887 GAGAAAGAACCTTGACC 67903 || ||| |||||||| Sbjct 126705 GAAAAACTTCCTTGACC 126721 >seq1688 Length=72660 Score = 118 bits (130), Expect = 1e-21 Identities = 128/169 (76%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| |||||||| || ||||||||||||||||| | ||| Sbjct 24708 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCT 24767 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | |||||||||||||| | | ||||| | ||||| |||||||| | | | Sbjct 24768 AAAGCAGTGAACCAGATCCCTATTACAGGCCAAGCAGC---CAAGAAGTGTAAAGAACGA 24824 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCAT 67638 |||||||||||| ||||| |||||||| || ||||| || || |||| Sbjct 24825 GAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCAT 24873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566866211592480