Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3095 250 3e-61 seq9 241 1e-58 seq2645 230 3e-55 seq1688 147 2e-30 seq748 129 7e-25 seq3349 86.0 7e-12 >seq3095 Length=35243 Score = 250 bits (276), Expect = 3e-61 Identities = 335/460 (73%), Gaps = 17/460 (4%) Strand=Plus/Minus Query 68377 CCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTAT 68436 |||||||| | ||| | | || ||| || || | || ||||||||||| || || ||| Sbjct 20251 CCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATAT 20192 Query 68437 GCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATG 68496 |||||| ||||||||||||||||| ||||| | ||||||||| ||||| ||||| Sbjct 20191 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATA 20132 Query 68497 TATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTAC 68556 || | | ||||| | |||||| | | | || | ||||||| |||||||| Sbjct 20131 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTAT 20072 Query 68557 AACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTT 68616 ||||||||||||| | ||| |||||||| || |||||||| | || || || Sbjct 20071 AACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAGTGCAATCCGATCGCCGCA 20016 Query 68617 GAA----CTAGGAACAACAGCACCAG-----AAATGATGTTGTTACCATACAGAAGTGAA 68667 ||| |||||| || ||||||| | || || ||||| ||||| || | ||| Sbjct 20015 GAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGTTTCCATAAAGTAAAGAA 19956 Query 68668 CCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACG 68727 |||| |||||| |||||||||||||| || || || || || ||||||||||| |||| Sbjct 19955 CCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAAGCGATA 19896 Query 68728 ATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAA 68785 || || ||||| ||||| | ||| || ||||||||||||| || |||||||| || | Sbjct 19895 ATAAATACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCGAACCATCCGA 19838 Query 68786 CGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||||| ||||| || ||| ||| | ||| | |||||| Sbjct 19837 TGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 19798 >seq9 Length=772998 Score = 241 bits (266), Expect = 1e-58 Identities = 330/461 (72%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 68265 AGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAG 68324 ||| || || | ||| || || || ||||| ||||||||||||||| | | ||| || | Sbjct 515588 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 515647 Query 68325 CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACC 68384 ||| |||||||||||||| | || || | |||||| | |||||||| |||||||| Sbjct 515648 CATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 515707 Query 68385 GAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACA 68444 | ||| || | || ||| || || | || |||| |||||| || || | ||||||| Sbjct 515708 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 515767 Query 68445 GATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAA 68504 ||||||||| ||||||| |||| | ||||||||| ||||| ||||| || | Sbjct 515768 AATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGC 515827 Query 68505 GATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564 | ||||| | |||||| | | | || | |||||||||||||||| ||||| || Sbjct 515828 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 515887 Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGG 68624 |||||| | ||| |||||| ||| || ||||| || |||| | | | || Sbjct 515888 ATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCG-------AGTTGG 515935 Query 68625 AACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACG 68684 || || |||||||| || || ||||| ||||| || | |||||| || ||| ||| | Sbjct 515936 AAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATG 515995 Query 68685 AATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGA 68725 ||||||||| || || | || ||| ||||||||||||| Sbjct 515996 AATACCATCAATATC--TATTGGAAGCTGCGATGAAGGCGA 516034 >seq2645 Length=47068 Score = 230 bits (254), Expect = 3e-55 Identities = 284/382 (74%), Gaps = 5/382 (1%) Strand=Plus/Plus Query 68446 ATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAG 68505 ||||||||||||||||| ||||| | ||||||||| ||||| ||||| || | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 68506 ATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCA 68565 | ||||| | ||| || | | | || | |||||||||||||||| ||||| ||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 68566 TCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGA 68625 |||| | ||| ||||||||||| || ||||| || | || || | ||| ||||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 68626 ACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGA 68685 | || |||||||| || || ||||| ||||| || || ||||||| |||||| |||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 68686 ATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGT-TG 68743 |||||||| || || || || || || ||||||||||||| || || ||||| | | || Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 45713 Query 68744 CTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTG 68803 | ||| || ||||||||||||| || || ||||| || | |||||| || ||||| | Sbjct 45714 GT-CAATAAG-GTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGG 45771 Query 68804 TGGAAGTCACCCATTCGCAGAA 68825 || ||| | ||| | |||||| Sbjct 45772 TGCTAGTTATCCAGTTGCAGAA 45793 Score = 224 bits (248), Expect = 1e-53 Identities = 283/382 (74%), Gaps = 5/382 (1%) Strand=Plus/Minus Query 68446 ATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAG 68505 ||||||||||||||||| ||||| | ||||||||| ||||| ||||| || | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 68506 ATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCA 68565 | ||||| | ||| || | | | || | |||||||||||||||| ||||| ||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 68566 TCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGA 68625 |||| | ||| ||||||||||| || ||||| || | || || | ||| ||||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 68626 ACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGA 68685 | || |||||||| | || ||||| ||||| || || ||||||| |||||| |||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 68686 ATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGT-TG 68743 |||||||| || || || || || || ||||||||||||| || || ||||| | | || Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 1112 Query 68744 CTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTG 68803 | ||| || ||||||||||||| || || ||||| || | |||||| || ||||| | Sbjct 1111 GT-CAATAAG-GTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGG 1054 Query 68804 TGGAAGTCACCCATTCGCAGAA 68825 || ||| | ||| | |||||| Sbjct 1053 TGCTAGTTATCCAGTTGCAGAA 1032 >seq1688 Length=72660 Score = 147 bits (162), Expect = 2e-30 Identities = 136/172 (79%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 67948 CTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACA 68007 ||||||| | ||| |||||||| ||||||||||| |||||||||||||| || |||| | Sbjct 24705 CTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATA 24764 Query 68008 CCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAA 68067 || | |||||||||||||| || | |||||||| ||||| |||||||| | ||| Sbjct 24765 CCTAAAGCAGTGAACCAGATCCCTATTACAGGCCAAGCAGC---CAAGAAGTGTAAAGAA 24821 Query 68068 CGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCAT 68119 || ||||||||||| ||||| |||||||| | ||||| || || |||| Sbjct 24822 CGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCAT 24873 >seq748 Length=127770 Score = 129 bits (142), Expect = 7e-25 Identities = 153/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 68179 GACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCA 68238 || |||||||||||||| || | | || ||| || |||| ||||| |||||| ||| Sbjct 126517 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 126576 Query 68239 CTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGG 68298 ||||| || || || || ||||| ||||| || || | || || || || ||| | ||| Sbjct 126577 CTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 126635 Query 68299 ATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGC 68358 |||||||||| ||| ||||| || | ||| |||||||||||||||| || || | || | Sbjct 126636 ATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 126695 Query 68359 ATTGCGTCAGAGAACGAACCTTGACC 68384 || | | ||| || |||||||| Sbjct 126696 ATACCATTAGAAAAACTTCCTTGACC 126721 >seq3349 Length=30989 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| ||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 25163 CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 25104 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 25103 AGCTACTGAGGA 25092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571972682028960