Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq219 141 3e-28 seq1132 123 7e-23 seq1709 120 9e-22 seq209 104 7e-17 >seq219 Length=232383 Score = 141 bits (156), Expect = 3e-28 Identities = 214/300 (71%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| |||||||| || | ||| |||||||| ||||| |||||| |||| ||||| Sbjct 100400 GCGATGAGACCACATTTCTCACATACATGGACTCTGTACGCATCACTCTGGTCAAATAGC 100459 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| ||| || || ||||||| |||||||||||| | ||||||||||||| Sbjct 100460 CTTTCCTTCAGGAAAAAAGCGGCTCCGTGTGCAATCATACAATCCCTCTCCATTTCACCG 100519 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 ||||| ||||||||||| || | | || || || || || || ||||| | | | Sbjct 100520 AAACGGAGACCACCATCACGTGAACGCCCTTCTGCTGGTTGTCGGGTGAGTATCTGGACA 100579 Query 251584 GGACCGATGGAGCGGCT--ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 ||||| || | | |||| |||||||| ||||| |||||||| | ||||| Sbjct 100580 GGACC--ACGACCTCTTGAATGTATCTTATCATCCACCATGTGCTTGAGTCTTTGGTAAT 100637 Query 251642 ATGCGGGACCGATGAAGATGCTCGAAGGCA-TTTGCTCTCCAGTTAGAGCGTTATACATA 251700 ||| |||||| | ||| || | | | || ||| || |||||| || | || |||||| Sbjct 100638 ATGTGGGACCCAAGAAAATCATAGCGGTCAGTTTTCT-TCCAGTGTGACCATTGTACATA 100696 >seq1132 Length=101899 Score = 123 bits (136), Expect = 7e-23 Identities = 233/340 (69%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| || ||| ||||| |||||| || | | | || Sbjct 87050 ATTTCTTACAGTACCATCATATTTAACCATGATGTCCTCCATAGCTTTCACAAGTCTCCG 87109 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || |||| ||||| ||| || || |||||||||||||| ||||| | | |||||| Sbjct 87110 TTGGATATGGCCAGTCTCAGAAGTCTTCACAGCTGTATCAATCAGACCTTCTCTACCACC 87169 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGA 302716 ||||||||||||||| | |||| || ||| ||||| || | || |||| || | Sbjct 87170 CATAGCATGGAAGAAAAATTCTTGAGG-CGTCAGCCCTTGAAGGTAAGAATTCTCCACAA 87228 Query 302717 AACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 | ||||| || || || ||| || || || ||||||| || | | Sbjct 87229 ATCCACGACTTTCAGGACCATAGTCATCTTTCGTGAAATGTGGCAATGTTCAATCAATGA 87288 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || ||||||||||||| || ||||| ||||||||||| | || | | |||| || | Sbjct 87289 AACCAAATGGGATACGCTTGCCCTCAACATTCTGCTGTCCAACACAAGCAGTCATTTGTG 87348 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||||| | |||||| || || | ||| | ||||| Sbjct 87349 AAATATTAATGAAACTGCCTTTTGAATCTGCAGTAACCAT 87388 >seq1709 Length=73423 Score = 120 bits (132), Expect = 9e-22 Identities = 230/339 (68%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| ||||| |||||| || | | | || Sbjct 11764 ATTTCTTACAGTACCATCATATTTGACCATGATGTCCTCCATAGCTTTCACAAGTCTCCG 11705 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || || || |||||||| ||||| | | |||||| Sbjct 11704 CTGGATATAGCCAGTCTCAGAAGTCTTCACGGCAGTATCAATCAGACCTTCCCTACCACC 11645 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | |||| ||| ||||| | || | ||| |||| || || Sbjct 11644 CATAGCATGGAAGAAAAATTCTTGAGGTGTCAGCCCTCGAAGGTAAGAGTTCTCCACAAA 11585 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || || ||| || || || ||||||| || | | | | Sbjct 11584 TCCACGACTTTCAGGACCATAGTCATCTTTTGTGAAATGTGGCAATGTTCGATCGATAAA 11525 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || |||||||||| || || ||||| ||||||||||| | || | | |||| || || Sbjct 11524 ACCAAATGGGATACGTTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGTGA 11465 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| || | ||| || || || || || | ||||| Sbjct 11464 AATGTTAATGAAACTTCCTTTTGAACCGGCCGTCACCAT 11426 >seq209 Length=235896 Score = 104 bits (114), Expect = 7e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 |||||| ||||| ||||| |||||||| | |||||| |||| || |||||||| ||| || Sbjct 50838 GCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 50897 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 ||||||||| ||||| ||||| ||||||| ||||| | |||| ||| ||| Sbjct 50898 ATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGA 50952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471602094627236