Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq9 217 2e-51 seq3095 201 1e-46 seq2645 167 3e-36 seq1688 141 1e-28 seq748 123 3e-23 >seq9 Length=772998 Score = 217 bits (240), Expect = 2e-51 Identities = 325/461 (70%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 157680 TCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 157739 |||||||| |||| ||| || | || || || || || | ||| || | ||||| Sbjct 516034 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 157740 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTG 157799 | | | ||||| ||||| || ||||||||||| || | |||||| | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTT-------TCCAACTCGATTG 515924 Query 157800 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTG 157859 || || || || || |||||| ||||| |||||||| ||| | || || |||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 157860 GTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTG 157919 |||||| | || | || | |||||| | ||||| | | || ||||| |||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 157920 AGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTC 157979 ||||||||||| | | || | ||||||| || ||||| ||| ||| |||| |||| Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 515749 Query 157980 CAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCG 158039 | || | || || ||||||| ||| | | || ||| | |||||||| |||||| | Sbjct 515748 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 515689 Query 158040 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 158099 ||| ||||||| | || |||| ||||||||| |||| ||| |||||||| | | ||| | Sbjct 515688 ATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 515629 Query 158100 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158140 |||||||||||||||| || || || ||| | ||||| ||| Sbjct 515628 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 201 bits (222), Expect = 1e-46 Identities = 332/476 (70%), Gaps = 15/476 (3%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| ||||| || || |||| ||| ||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 157759 CATCAT-----CTCTGGTGCAGTTGT----ACCATCTTCCAACGCAATTGGTCTTCACTT 157809 || || ||||||||| || | ||| |||| || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 157810 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 157869 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 157870 ACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACT 157929 || | || | |||||| | ||||| | | || ||||| |||||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 157930 TTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGC 157989 | | |||| | |||||||| || ||||| ||| |||||||| ||||| || || || Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 157990 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158045 || ||||||| ||| | | | ||| | |||||||| ||| || ||||||| Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 167 bits (184), Expect = 3e-36 Identities = 268/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | |||| ||||| || || |||||||| |||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||||||||| || | || |||| | || || | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | || ||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 157939 TTTAGGTATGCGCCCCTGGAT 157959 | | |||||||| || ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 Score = 163 bits (180), Expect = 3e-35 Identities = 267/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | |||| ||||| || || |||||||| |||| || || Sbjct 1092 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 1149 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 1150 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 1209 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || |||||||||| || | || |||| | || || | || || || || || Sbjct 1210 TATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 1269 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 1270 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 1329 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | || ||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 1330 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1389 Query 157939 TTTAGGTATGCGCCCCTGGAT 157959 | | |||||||| || ||||| Sbjct 1390 TCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 141 bits (156), Expect = 1e-28 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 158276 GTCGCAGC-ACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 158334 ||||||| | |||| || || ||||| || ||||||||||| ||| ||||||||||| Sbjct 24884 GTCGCAGTGAAATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTC 24825 Query 158335 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCT 158394 ||||| || |||||||| ||||| |||||||| | || ||||||||||| || | Sbjct 24824 TCGTTCTTTACACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTT 24768 Query 158395 TGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGA 158454 || | || |||||||||||||| || |||||||| |||||||| || | |||| Sbjct 24767 AGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 24708 Query 158455 TGGTCAGGGTCGTGTGTTGAACACCTGGGCAGAT 158488 | | || ||||| | |||| || ||||| ||| Sbjct 24707 TAGCCAAGGTCGCCTTATGAATACTTGGGCTGAT 24674 >seq748 Length=127770 Score = 123 bits (136), Expect = 3e-23 Identities = 121/155 (78%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 158021 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158080 |||||||| ||| || ||| |||| || | || |||||||||||||| |||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 158081 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158140 |||||||||| ||| | ||||||||||||| ||| || || || || | ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 158141 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 158175 || |||||||| || || || ||| ||||||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 126568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548296064716960