Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq3095 233 2e-56 seq9 228 9e-55 seq2645 192 6e-44 seq1688 131 2e-25 >seq3095 Length=35243 Score = 233 bits (258), Expect = 2e-56 Identities = 322/447 (72%), Gaps = 15/447 (3%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| ||||||||||| ||||||| || || | ||| | ||||| Sbjct 19825 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 19884 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || ||||||||||| || || || || || ||||| || ||||| Sbjct 19885 TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAG 19944 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCAT-----CTCTGGTGCTGTTGTTC 151040 || ||| |||||||| | | || || ||||| || || ||||||||| || ||| Sbjct 19945 CCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTC 20004 Query 151041 CTTC----TTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTC 151096 || | |||| || ||||| ||||||| || || |||||||| || ||| | Sbjct 20005 CTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGTT 20060 Query 151097 GATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGT 151156 ||||| ||| | ||||| || ||||||| | || |||| | |||||| | ||||| Sbjct 20061 GATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 20120 Query 151157 ATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGG 151216 | | ||| |||||||||||||||||||| || ||| ||||||||||||| ||| Sbjct 20121 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 20180 Query 151217 ATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCC 151275 || ||| |||||||| || ||||| ||||| ||||| | ||| || ||| | | | || Sbjct 20181 AT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCC 20239 Query 151276 TTTCGGTCAAGGTTCTTTCTCTGATGC 151302 | | |||||||| ||| |||||||| Sbjct 20240 TATTGGTCAAGGAAGTTTTTCTGATGC 20266 Score = 102 bits (112), Expect = 9e-17 Identities = 122/163 (75%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | ||||||||||||||| | || ||||| || Sbjct 21346 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGG 21288 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG----CGGTTGGCTTACTGGGACTA 152473 || | || ||||| ||||||| | ||| | || |||||| |||| ||||||| Sbjct 21287 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTA 21228 Query 152474 CTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTA 152516 |||| | || ||||||||| || || ||||| |||||||| Sbjct 21227 CTTTTGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTA 21185 >seq9 Length=772998 Score = 228 bits (252), Expect = 9e-55 Identities = 330/463 (71%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 || |||||||| ||| || | || || ||||| || | ||| || || ||||||| Sbjct 516032 GCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATTTTTGGTTCT 515975 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 | | || || ||||| || ||||||||||| || |||| ||| | || Sbjct 515974 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGAT---- 515926 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 |||| || || || || |||||| || ||||| ||||||||| | ||||| |||||| Sbjct 515925 -TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 515867 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAG 151180 |||| | || |||| | |||||| | ||||| | | ||| |||||||||||| Sbjct 515866 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 515807 Query 151181 TGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCC 151239 |||||||| || | | ||||||||| ||| ||||| ||| |||||| | || ||||| Sbjct 515806 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAAATTCAGCTCC 515748 Query 151240 AGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 151299 ||| | ||||| | ||| || ||| | | || ||| | |||||||| ||||||||| Sbjct 515747 TGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGA 515688 Query 151300 TGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCA 151359 || ||||| | || || | ||| || ||||||| ||| |||| ||| | | |||||| Sbjct 515687 TGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCA 515628 Query 151360 CAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGT 151402 |||||| || ||||| || || || ||| | ||||| ||| || Sbjct 515627 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq2645 Length=47068 Score = 192 bits (212), Expect = 6e-44 Identities = 255/353 (72%), Gaps = 1/353 (0%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 || ||||| || |||| ||||| || || ||||||| || || | ||| | |||| Sbjct 45766 AATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACCACAACT 45707 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || |||||||| || || || || || || ||||| || ||||| Sbjct 45706 TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAG 45648 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || ||| |||||||||| | || || ||||| || ||||||||||| || ||||| || Sbjct 45647 CCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACT 45588 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||| | ||||| |||| || || || || |||||||| || || | ||||||||| Sbjct 45587 TCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGG 45528 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCT 151165 | ||||| |||||||||| | || |||| | || ||| | ||||| | | | Sbjct 45527 TTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGT 45468 Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGAT 151218 || |||||||||||||||||||| || ||| ||||||||||||| ||||| Sbjct 45467 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 187 bits (206), Expect = 3e-42 Identities = 254/353 (72%), Gaps = 1/353 (0%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 || ||||| || |||| ||||| || || ||||||| || || | ||| | |||| Sbjct 1059 AATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACCACAACT 1118 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || |||||||| || || || || || || ||||| || ||||| Sbjct 1119 TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAG 1177 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || ||| |||||||||| | || || ||||| || |||||||||| || ||||| || Sbjct 1178 CCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACT 1237 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||| | ||||| |||| || || || || |||||||| || || | ||||||||| Sbjct 1238 TCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGG 1297 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCT 151165 | ||||| |||||||||| | || |||| | || ||| | ||||| | | | Sbjct 1298 TTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGT 1357 Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGAT 151218 || |||||||||||||||||||| || ||| ||||||||||||| ||||| Sbjct 1358 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 131 bits (144), Expect = 2e-25 Identities = 124/158 (78%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 151547 GGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCAC 151606 ||||| |||||||| | ||||||||||| ||| |||||||| || ||||| | ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 151607 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACC 151666 ||||| || || |||||||| | || |||||||||||||| | ||| | || || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 151667 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704 |||||||||||||| || |||||||| |||||||| || Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549543886440160