Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq9 179 4e-40 seq3095 150 2e-31 seq2645 132 6e-26 seq1688 125 8e-24 >seq9 Length=772998 Score = 179 bits (198), Expect = 4e-40 Identities = 319/467 (68%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 72328 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 72387 || ||| | || |||||||| ||| |||| | ||||| || || || || || || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 72388 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 72447 |||||||| | ||||| ||||| || ||||||||||| | ||||| || Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACTC----- 515929 Query 72448 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAT 72507 |||| || || || || || |||||| || || | || || ||||| || Sbjct 515928 -------GATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567 || || |||||||| || || || || | |||||| | |||| | || || ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627 ||| | |||||||||| | | | || || ||| |||||||| ||| ||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687 ||||| ||||| || || || ||| || ||| | | || || | ||||| || Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 ||||||||||||||||| |||| |||| ||||| |||||||| ||| | || ||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 72794 | ||| |||||||| || ||||| || || || ||| ||||||||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 150 bits (166), Expect = 2e-31 Identities = 284/414 (69%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 19807 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 19865 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 19866 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 19925 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACA-----ACATC 72417 ||| || || || | || || ||| | |||||||| | ||||| |||| | || Sbjct 19926 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATT 19985 Query 72418 ATCTCTGGTGCTGTAGTT----CCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 ||||||||||| | || || |||| || || ||||| ||||| || | Sbjct 19986 ATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC---- 20041 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 ||||||||| || || | || |||||||| || || || |||||||| || || || | Sbjct 20042 CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 20101 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||||| | |||| | || || |||||| | |||||||||| | | | Sbjct 20102 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 20161 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 72647 || || ||| | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 20162 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 20212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || |||||||| || || |||||||| || Sbjct 21346 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 21287 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGT----AGGAACTAC 73479 || || || || ||||||||||| | || | || |||||||| || ||| ||||| Sbjct 21286 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 21227 Query 73480 TTTCGTGACCTCATGGTACACACATGGTATTG 73511 ||| || || || ||||| || ||||| |||| Sbjct 21226 TTTTGTAACTTCTTGGTATACCCATGG-ATTG 21196 >seq2645 Length=47068 Score = 132 bits (146), Expect = 6e-26 Identities = 255/372 (69%), Gaps = 3/372 (1%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || ||||| | ||| | || |||||||| || || |||||||| Sbjct 45784 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCC- 45726 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || | || || || ||| | || |||||||| || |||||||| || Sbjct 45725 TACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGA 45667 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||| | | ||||| ||||| || ||||| Sbjct 45666 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTC 45607 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||||| | |||| |||| | || ||||| || || || || || |||||||| Sbjct 45606 TGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGC 45547 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || | | || || ||||| || || || |||||||| || || || || | || || Sbjct 45546 TGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTT 45487 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 45486 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 45427 Query 72603 GAGACCTTGGAT 72614 | | |||||||| Sbjct 45426 GCGTCCTTGGAT 45415 >seq1688 Length=72660 Score = 125 bits (138), Expect = 8e-24 Identities = 130/170 (76%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 72941 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTAC 73000 |||| || || ||| ||||||||||||| ||||| ||||||||||||||||| |||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 73001 ACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTA 73060 |||||| | |||| | |||||| | | | ||||| || | | ||||| ||| Sbjct 24813 ACTTCT---TGGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 73061 CAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 73110 | |||||||||||||| || || ||||| ||||||||||| || || ||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572791765006240