Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1785 86.0 5e-12 seq927 86.0 5e-12 seq2252 84.2 2e-11 >seq1785 Length=68507 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| || Sbjct 65116 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAGGTGGAGTCTTCG 65175 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| ||||| || ||| | || ||| || Sbjct 65176 GACACCATTGATAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 65235 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| ||| ||||| ||||||||||||| | | || ||||||| |||||| Sbjct 65236 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 65295 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || | ||| ||||| Sbjct 65296 ATTCAGAAGGAATCCACCCTCCACTTGGTG 65325 >seq927 Length=112269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | |||||||| ||||| ||| | || |||| || Sbjct 58224 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 58283 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| || ||| | || ||| || Sbjct 58284 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 58343 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||||| | ||| | || ||||||||| Sbjct 58344 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 58403 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || ||||| | ||| ||||| Sbjct 58404 ATACAGAAGGAGTCTACCCTCCACCTGGTG 58433 >seq2252 Length=53314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || ||| | ||| || || ||||| || |||| ||| ||||| || |||| Sbjct 37878 GACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 37819 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | || ||||| |||||||||||||| || || | ||| |||| | Sbjct 37818 GATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGGTCCTG 37759 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 37758 AGGCTCAGAGGTGGAA 37743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412784099938004