Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1785 91.5 1e-13 seq1689 87.8 1e-12 seq927 82.4 6e-11 >seq1785 Length=68507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| || Sbjct 65116 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAGGTGGAGTCTTCG 65175 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| || || || ||| | || ||| ||| Sbjct 65176 GACACCATTGATAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 65235 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| ||||| ||||||||||| | | || |||||||||||||| Sbjct 65236 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 65295 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| || || | ||| ||||| Sbjct 65296 ATTCAGAAGGAATCCACCCTCCACTTGGTG 65325 >seq1689 Length=72926 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || || | || ||||| || || || | || || ||| Sbjct 2791 AATGCAAATTTTTGTAAAGACCCTTACTGGCAAGACAATCACGTTGGAGGTTGAAAGCTC 2732 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || || |||||| || || || ||| | ||| || | Sbjct 2731 -CGACACAATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACC 2673 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || || ||||| ||||| | | ||| |||||||||||| Sbjct 2672 AGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACACTGGCGGACTACA 2613 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || ||||||||||| | ||| | ||| || Sbjct 2612 ACATCCAGAAGGAGTCTACTCTCCACCTTGTGCTG 2578 >seq927 Length=112269 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | || ||| || Sbjct 57768 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCTTCT 57827 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 57828 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCCCCGGACCAG 57887 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| | || | || ||||||||| Sbjct 57888 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACCCTCGCCGACTACAAC 57947 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 57948 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 57977 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | || |||| || Sbjct 58224 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 58283 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | || ||| ||| Sbjct 58284 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 58343 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || || ||||| ||||| | ||| | || || |||||| Sbjct 58344 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 58403 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 58404 ATACAGAAGGAGTCTACCCTCCACCTGGTG 58433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398821244937892