Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1785 109 4e-19 seq84 109 4e-19 seq1689 107 1e-18 seq2252 91.5 1e-13 >seq1785 Length=68507 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || ||||| || || || ||||| || || |||| |||||| | Sbjct 65102 CGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCA 65043 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 65042 TCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCCTTG 64983 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 64982 TCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTAATG 64923 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 64922 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 64888 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | |||||||| || || || || || || || ||||| || || ||| Sbjct 64658 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 64599 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||| ||||||||| | || | | ||||||||||| || Sbjct 64598 AGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 64539 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | ||||| || || || Sbjct 64538 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACC 64479 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 64478 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 64432 >seq84 Length=349560 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || ||||| || || ||||||||||| || |||| ||||| | Sbjct 21971 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCTGCAAGAGTGCGGCCA 21912 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | |||| || ||||| || || || || ||||| ||| Sbjct 21911 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 21852 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 21851 TCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATG 21792 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| ||||| || |||||||| Sbjct 21791 GTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 21757 >seq1689 Length=72926 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || || | ||||| || || || || || ||||| || || || Sbjct 2336 CCACCCCTAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 2395 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || || ||||| | || | || ||||| ||||| || Sbjct 2396 AGTGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 2455 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || ||| |||| |||||| | || | ||||||||| || || Sbjct 2456 ATGCCCTCTTTGTCCTG-AATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 2514 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||||| || || || || | ||| || |||||||||||||| Sbjct 2515 CTCCAATGTTATTGTCTTTCCTGTAAGGGTCTTCACAAATATCTGCAT 2562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| || || || | || || || || || || || ||||| ||||| || Sbjct 2791 TCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 2850 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || || || |||||| | || | || ||||| ||||| || Sbjct 2851 CAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGG 2910 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||| || || || ||| || | || ||| | | | ||||| || || | Sbjct 2911 TATACCCTCCTTATCCTG-AATCTTGGCCTTAACATTGTTGATCGTGTCCGAGCTCTCAA 2969 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || |||||||| | || || || ||||||||||| Sbjct 2970 CCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 3018 >seq2252 Length=53314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| ||||| ||||| || || |||||||||||||||||||| || | || | ||| Sbjct 37759 CAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATC 37818 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || |||||| | |||| |||||||| || || ||||| ||||| ||||| Sbjct 37819 TTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 37878 Query 29694 TTG 29696 || Sbjct 37879 CTG 37881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385165547151348