Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq9 212 8e-50 seq3095 196 6e-45 seq2645 167 3e-36 seq1688 125 9e-24 seq748 120 4e-22 seq168 96.9 4e-15 seq1305 87.8 2e-12 >seq9 Length=772998 Score = 212 bits (234), Expect = 8e-50 Identities = 326/462 (71%), Gaps = 16/462 (3%) Strand=Plus/Minus Query 177658 TCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 177717 |||||||| |||| ||| || | || || || || || | ||| || | ||||| Sbjct 516034 TCGCCTTCATCGCAGCTTCCAA--TAGATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 177718 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTG 177777 | | | ||||| ||||| || ||||||||||| || | |||||| | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTT-------TCCAACTCGATTG 515924 Query 177778 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTG 177837 || || || || || |||||| ||||| |||||||| ||| | || || |||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 177838 GTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTG 177897 |||||| | || | || | |||||| | | || | | |||||||| |||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 177898 AGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCAC 177957 ||||||||||| | | |||| ||||||| || ||||| ||||||| | || || | Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 515749 Query 177958 CTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCC 178016 ||||| |||| || | || || ||||| | | || ||| | |||||||| ||||| Sbjct 515748 CTGTTTCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 515690 Query 178017 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 178076 |||| ||||||| | || |||| ||||||||| |||| ||| |||||||| | | ||| Sbjct 515689 GATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAG 515630 Query 178077 CACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT 178118 ||||| ||||||||||| || || |||||| | ||||| ||| Sbjct 515629 CACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 196 bits (216), Expect = 6e-45 Identities = 333/477 (70%), Gaps = 17/477 (4%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || |||| ||| ||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 177737 CATCAT-----CTCTGGTGCAGTTGT----ACCATCTTCCAACGCAATTGGTCTTCACTT 177787 || || ||||||||| || | ||| |||| || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 177788 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 177847 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 177848 ACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACT 177907 || | || | |||||| | | || | | |||||||| |||||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 177908 TTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGC 177967 | | |||||| |||||||| || ||||| ||||||||| || || ||||||||||| Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 177968 AGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTA 178023 || | || || ||||| | | | ||| | |||||||| || || ||||||| Sbjct 20213 TGCTACTGCTGT-TTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 167 bits (184), Expect = 3e-36 Identities = 268/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | ||||| |||| || || |||||||| |||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || |||| | || || | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | || ||| | | || | | |||||||| ||||||||||||||| | ||| Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 177917 TCTAGGTATGCGCCCCTGGAT 177937 ||| |||||||| || ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 Score = 163 bits (180), Expect = 3e-35 Identities = 267/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | ||||| |||| || || |||||||| |||| || || Sbjct 1092 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 1149 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 1150 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 1209 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || |||||||||| || | || |||| | || || | || || || || || Sbjct 1210 TATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 1269 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 1270 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 1329 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | || ||| | | || | | |||||||| ||||||||||||||| | ||| Sbjct 1330 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1389 Query 177917 TCTAGGTATGCGCCCCTGGAT 177937 ||| |||||||| || ||||| Sbjct 1390 TCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 125 bits (138), Expect = 9e-24 Identities = 124/160 (78%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 178264 ATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGC 178323 ||||||| || ||||| || |||||||||||||| ||||||||||| ||||| | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 178324 ACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCA 178383 ||||||| || || ||||||||| | || ||||||||||| || | ||| | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 178384 CCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178423 | |||||||| ||||| ||||| ||||| |||||||| || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 24717 >seq748 Length=127770 Score = 120 bits (132), Expect = 4e-22 Identities = 121/156 (78%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 177999 GGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 178058 |||||||| || || ||| |||| || | || |||||||||||||| |||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 178059 CTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT 178118 |||||||||| ||| | ||||| ||||||| ||| || || ||||| | ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 178119 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 178154 || |||||||| || || || ||| |||||||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCAT 126567 >seq168 Length=262312 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||||||||| || ||| | || | || ||||| || |||||||| Sbjct 15073 TACATCCTTGATGCTGCTGAGGATAATGGTGTGGAGTTGCCATACTCATGCCGTGCTGGG 15132 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || || ||||| ||||| ||| | | | || ||||||||||| ||| || Sbjct 15133 GCTTGCTCCACCTGCGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCCGACGGATCC 15192 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||| || || | ||| | | | |||| || || | ||||||| Sbjct 15193 TTCCTGGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGTGTCTCGTACCCCAAG 15252 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 ||||| ||| | || | ||| | || || | ||| || |||| Sbjct 15253 TCCGACTGTGTCATACACACTCACAAGGAAGGCGATCTGTACT 15295 >seq1305 Length=91268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||||||||| || || | || | || ||||| || |||||||| Sbjct 28287 TACATCCTTGATGCTGCTGAGGATAATGGCGTGGAGTTGCCATACTCATGCCGTGCTGGG 28346 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || ||||| || |||||||| ||| | | | || ||||||||||| || || Sbjct 28347 GCTTGTTCCACATGTGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCAGATGGATCC 28406 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 || |||||||||| || || | ||| | | | ||||||| || ||||||| | Sbjct 28407 TTTCTTGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACTTGTGTGTCATACCCTAAG 28466 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 || || ||| | || | || | ||||| | || || |||| Sbjct 28467 TCGGACTGTGTCATCCACACACACAAAGAAGGTGACCTGTACT 28509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605580680440480