Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq201 111 1e-18 seq2715 107 1e-17 seq22 107 1e-17 seq4465 102 6e-16 seq1422 102 6e-16 seq763 100 2e-15 seq3577 96.9 3e-14 seq2094 91.5 1e-12 seq1988 91.5 1e-12 >seq201 Length=241772 Score = 111 bits (122), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| ||||| |||| |||||| | || | | |||| || | || | Sbjct 139934 ACATCAAAGGTACCACCTCCCAAATCAAACACTAGGA---TTGTTTCATTATTTT---TC 139987 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| ||||| || || | |||||||||||||| || ||||| | | ||| | Sbjct 139988 TTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGAACCTCC 140047 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || |||||||| || ||| |||||||||||| || |||||||| Sbjct 140048 AGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAATATGCT 140107 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 ||||| |||| ||| || | ||| Sbjct 140108 GGAACTGTAACAACTGCTTTTGT 140130 >seq2715 Length=43111 Score = 107 bits (118), Expect = 1e-17 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 |||||| ||| || || |||| |||||||| || | | | ||| || | || | Sbjct 22123 AACATCGAAGGTACCGCCTCCCAAATCAAAAACTAGGATAGT---TTCATTATTTT---T 22070 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || |||| |||||| || | | ||||||||||||||||| ||||| | | ||| | Sbjct 22069 CTTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTTATAATACGGAGAACCTC 22010 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || ||||| | || |||||||| || ||| |||||| |||||||| |||||||| Sbjct 22009 AAGTCCCGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGCGAATCGTTGAAATATGC 21950 Query 282454 AGGAACAGT 282462 ||||| || Sbjct 21949 TGGAACTGT 21941 >seq22 Length=583761 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| ||||||||||||||| ||||| || || | | ||| Sbjct 190492 TTCTTGTCGAGACCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGGAGCACA 190551 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| ||| ||||| || ||||| || || || || || || || || Sbjct 190552 TTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGCGAGTCATTGAAGTAG 190611 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| || | ||| |||| Sbjct 190612 GCAGGAACTGTGACAACAGCAT 190633 >seq4465 Length=15934 Score = 102 bits (112), Expect = 6e-16 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG-- 282331 |||||| ||| || || || | ||||| || || |||||| | || | | ||| Sbjct 6822 ACATCAAAGGTACCGCCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCGACACTGGAA 6763 Query 282332 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || || ||||||||||| |||| |||||||||||| || ||||| || || | | Sbjct 6762 GCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTGGGCTCATTGATGATACGGAGG 6703 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| ||||||||||| || ||||| || ||||| || || || || || || || Sbjct 6702 ACATTCAGACCAGCAATCACACCCGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAAG 6643 Query 282449 TATGCAGGAACAGTAATAACGGC 282471 || |||||||| || | ||| || Sbjct 6642 TAGGCAGGAACTGTGACAACAGC 6620 >seq1422 Length=85827 Score = 102 bits (112), Expect = 6e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || ||||| ||||| || |||||| Sbjct 61204 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 61263 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | |||||||| || |||||||| | |||| ||| || ||||| || ||||||||| Sbjct 61264 ATCCGACCTGCATCCTTTGTGGCTTGACGCTGTGCATCATTGAAATAAGCTGGAACAGTA 61323 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || || || | || || ||| |||| |||| Sbjct 61324 ATCACAGCCTTTGAAACAGATTTGCCAAGGTAAG 61357 >seq763 Length=128940 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||||||||| || |||| ||||||||| Sbjct 42131 CCATAAGACAGAGCAGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCA 42190 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | ||||||||||| ||||| || | || | ||| || ||||| || ||||||||| Sbjct 42191 ATGCGGCCTGCATCTTTTGTGGCCTGACGCTGCGCATCATTGAAATAAGCTGGAACAGTA 42250 Query 282464 ATAACGGC 282471 || || || Sbjct 42251 ATCACAGC 42258 >seq3577 Length=27265 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||| |||||||| || ||||| ||||| |||| || | ||| |||||| Sbjct 11594 CCATAGGACAGAGCTGCAGCAGTGGGCTCATTGATAATCCTCATCACCTCAAGCCCAGCA 11535 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || ||||| || || || || | || | ||| || ||||| ||||| |||||| Sbjct 11534 ATTCTACCAGCATCCTTTGTAGCCTGACGCTGAGCATCATTGAAATAAGCAGGGACAGTA 11475 Query 282464 ATAACGGC 282471 ||||| || Sbjct 11474 ATAACAGC 11467 >seq2094 Length=60286 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| |||| ||||||||||| |||||||| || || | || ||| Sbjct 34925 TTCTTGTCAAGACCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATTATACGCATCACA 34984 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| || || || || ||||| || || || || ||||| || || Sbjct 34985 TTGAGGCCGGCAATGACACCAGCGTCCTTGGTGGCCTGCCTCTGCGAGTCGTTGAAGTAG 35044 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||||| Sbjct 35045 GCAGGCACTGTTACCACGGC 35064 >seq1988 Length=62588 Score = 91.5 bits (100), Expect = 1e-12 Identities = 298/460 (65%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || || || ||||||| || || | ||||| || || |||| | || || |||| Sbjct 43335 TCGATGCCCTCGAACAGGGAGTCGATCTCAATGGTTGTCTGAGCAGTTGACGACAGTGTG 43394 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || ||||| ||||| || || | || || || | || || | ||| | | | Sbjct 43395 CGCTTGGCACGCTCACAGGCAGTGCGCAGCCTGCGAAGAGCGCGTG--GGTTGCCACTGA 43452 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | || | || | |||||| |||| ||| | | || ||||| || || | Sbjct 43453 TATCCTTCTTGTGCTTGCGCTTGAATTCTTGAACGAAGTGGTTCACCAGACGGTTGTCGA 43512 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || |||||||| | | ||| | || | || || | || | ||| | || || | Sbjct 43513 AGTCCTCACCTCCAAGGTGAGTGTCACCAGCAGTGGCCTTCACCTCGAAGATGCCCTCCT 43572 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | ||||| || |||||||| | ||||| || || || ||| Sbjct 43573 CAATGGTGAGCAGCGACACATCGAACGTGCCACCACCAAGGTCAAAGATGAGCACGTTCT 43632 Query 282318 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | ||| || || ||||||||||| |||| || ||||| || || | Sbjct 43633 TCTCACCCGCGCTGCTGGCCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCCGTGGGCT 43692 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | ||| ||||| || |||||||| || ||||| || ||||| || | Sbjct 43693 CGTTGATGATGCGCAACACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCC 43752 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | || || || ||||| || || || || || | ||||| Sbjct 43753 TCTGCGAGTCATTAAAGTAGGCCGGCACTGTCACTACGGC 43792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740069333494728