Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1689 138 2e-27 seq238 118 2e-21 seq927 111 3e-19 seq6809 107 4e-18 seq1785 100 6e-16 seq267 95.1 2e-14 seq5287 93.3 8e-14 seq1507 91.5 3e-13 >seq1689 Length=72926 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||||| || | ||| |||||||| || ||||| ||||| ||||||| Sbjct 2108 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCC 2167 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || ||||| || ||||||||||| |||| || || ||||| || Sbjct 2168 AATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGG 2227 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || |||||||| || ||||| || || || || | || | || || Sbjct 2228 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTC-TGAGCTCTCAAC 2286 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| ||||| |||||||| Sbjct 2287 CTCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 2334 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | ||| || ||||| || ||||| || || || || | Sbjct 2336 CCACCCCTAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 2395 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || |||||||| ||||| || || || || || || || Sbjct 2396 AGTGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 2455 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || || || || ||||||||||| || ||||| ||||| || ||| || | || || Sbjct 2456 ATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATAGTGTCA-GAGCTCTCAAC 2514 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| ||||| ||||| | ||||| |||||||||||||| Sbjct 2515 CTCCAATGTTATTGTCTTTCCTGTAAGGGTCTTCACAAATATCTGCAT 2562 Score = 132 bits (146), Expect = 9e-26 Identities = 178/244 (73%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 82568 CTCCATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTG 82627 || || ||| ||| | || || | || ||||| || | || ||||| ||||| ||||| Sbjct 1865 CTTCAGTTAGCAC-TGCCACCGCGTAAGCGCAGGACAAGATGAAGAGTGGATTCCTTCTG 1923 Query 82628 TATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCT 82687 || || ||||| | | | | || || || || || || || |||||||| || || Sbjct 1924 GATGTTGTAATCTGCCAAGGTACGCCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCT 1983 Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 || ||||||||||| ||||||||||| || || ||||| || || ||||| ||||| || Sbjct 1984 CTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGT 2043 Query 82748 ATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806 || || | || || || | || ||||||||||| |||| ||||| ||||| |||| Sbjct 2044 GTC-CGAGCTCTCCACCTCTAGCGTGATCGTCTTGCCAGTCAGAGTCTTGACAAAGATCT 2102 Query 82807 GCAT 82810 |||| Sbjct 2103 GCAT 2106 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | ||||| || | ||| |||||||| || ||||| || || || || | Sbjct 2562 TACCACCCCTAAGGCGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCG 2621 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| || || || || ||||| | Sbjct 2622 CCAGTGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGGG 2681 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || |||||||| || ||||| ||||| || || ||| | Sbjct 2682 GGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCGGAGCTTTCAA 2741 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || |||||||| || | ||||||||||| || |||||| Sbjct 2742 CCTCCAACGTGATTGTCTTGCCAGTAAGGGTCTTTACAAAAATTTGCATT 2791 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| || || || | ||| ||||| || || ||||| || || ||||||| Sbjct 2792 CCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 2851 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || |||||||| || || |||||||| || || || || || || || ||| Sbjct 2852 AATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGT 2911 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || |||||||| |||||||| || || ||||| | ||||| || || | || || Sbjct 2912 ATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTTGATCGTGTCCG-AGCTCTCAAC 2970 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| |||| ||||| || ||||||||||| Sbjct 2971 CTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 3018 >seq238 Length=227787 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || |||| || | | || Sbjct 50265 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCA 50324 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 50325 TCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 50384 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || || || |||||||| ||| | || || |||||||| || Sbjct 50385 TCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCAGATGACTCAACCTCCAAAGTGATG 50444 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| ||||| |||||||| Sbjct 50445 GTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 50479 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | || | | ||| Sbjct 51305 CGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGACCA 51364 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 51365 TCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTG 51424 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || ||| | || || |||||||| || Sbjct 51425 TCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGATGACTCAACCTCCAAAGTGATG 51484 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| ||||| |||||||| Sbjct 51485 GTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 51519 >seq927 Length=112269 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | ||| || || | ||| || || || || ||||| || || || || | Sbjct 58224 TACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 58165 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| || | ||| || || || | Sbjct 58164 CAAGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCCGGTG 58105 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| || ||| || || | Sbjct 58104 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCA 58045 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 58044 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 57996 >seq6809 Length=3062 Score = 107 bits (118), Expect = 4e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 || ||||| || | || ||||| ||||| ||||| || || ||||| | | | | Sbjct 2868 AAGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGC 2927 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || || || |||||||| || || || ||||||||||| ||||||||| Sbjct 2928 CCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCTTCC 2987 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGT 82771 || || || ||||| || || ||||| ||||| || || || | || || || | || Sbjct 2988 TTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTC-CGAGCTCTCCACCTCTAGCGT 3046 Query 82772 TATCGTCTTGCCTGTC 82787 ||||||||||| ||| Sbjct 3047 GATCGTCTTGCCAGTC 3062 >seq1785 Length=68507 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||| || || || || ||||| || || || |||| || | | ||||| Sbjct 64644 CAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTC 64585 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || ||||| || ||||||||||| || | || ||||| || || || || ||||| || Sbjct 64584 CTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTC 64525 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| || || || || ||||| || || | || || || | || || || Sbjct 64524 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGT 64465 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || | ||||| || || |||||||| Sbjct 64464 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 64432 >seq267 Length=213022 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || ||||| || || || |||||||| || || ||||||| || |||| || || Sbjct 31468 CAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCTAACGTTCTCCCATC 31527 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| | ||| || ||||||||||| || ||||| || ||||| || || || ||||| || Sbjct 31528 TTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 31587 Query 82718 TTGAA 82722 |||| Sbjct 31588 CTGAA 31592 >seq5287 Length=9303 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || || || | || | | ||| Sbjct 5397 CGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 5338 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 5337 TCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 5278 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || || | || || |||| || ||| Sbjct 5277 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATC 5218 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| |||| ||||| || || ||||||||| Sbjct 5217 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATT 5182 >seq1507 Length=80756 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || || || | || | | ||| Sbjct 30602 CGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 30543 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 30542 TCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 30483 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || || | || || |||| || ||| Sbjct 30482 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATC 30423 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 30422 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 30388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981683439634092