Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5287 89.7 3e-13 seq1507 89.7 3e-13 seq2976 86.0 4e-12 seq1785 84.2 1e-11 seq927 84.2 1e-11 >seq5287 Length=9303 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 5392 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 5333 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 5332 CAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 5273 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | ||| | |||||| || ||||| || | ||||||||| | Sbjct 5272 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 5214 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 5213 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 5183 >seq1507 Length=80756 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 30597 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 30538 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 30537 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 30478 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | ||| | |||||| || ||||| || | ||||||||| | Sbjct 30477 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 30419 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 30418 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 30388 >seq2976 Length=39079 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 26496 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 26437 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || |||||||| || || | |||||||| || |||| | || || ||||| Sbjct 26436 GAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 26377 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | ||| | |||||| || ||||| || | |||||| || | Sbjct 26376 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCT 26318 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 26317 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 26287 >seq1785 Length=68507 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| || || || |||||||| || | || ||||| | || || Sbjct 65325 CACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 65266 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || |||||||||| ||||||||| || | || | || || ||||| Sbjct 65265 CAGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 65206 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| || | |||||| || ||||| || | ||||| || || Sbjct 65205 GATCTTTGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTT 65146 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||| || ||||||||||||||| Sbjct 65145 GCCAGTAAGCGTCTTCACAAAGATCTGCATA 65115 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | || ||||| | || || | ||| Sbjct 65090 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGT 65031 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||| ||| | || | ||| || ||||| || || Sbjct 65030 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTA 64971 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| | |||||| || ||||| |||| ||| || || || || || Sbjct 64970 GCCTTCA-CATTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTAATGGTCTTGCCAGT 64912 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 64911 GAGGGTCTTGACAAAGATCTGCAT 64888 >seq927 Length=112269 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | ||||| || || ||| ||| || || |||||||| |||| Sbjct 57995 ACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 57936 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||| || || || || || || | ||||||||| || | || Sbjct 57935 GAGGGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 57876 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || | | | ||| | |||||| || || | Sbjct 57875 TATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAA 57817 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || ||||||||||||||| Sbjct 57816 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATA 57767 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | ||||| || || ||| ||| || || |||||||| |||| Sbjct 58223 ACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 58164 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || || || ||||| || | ||| ||||| || | || Sbjct 58163 AAGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCCGGTGG 58104 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || || | ||| |||| |||||| || |||| Sbjct 58103 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCAATGGTGTCAGAAGACTCCA 58045 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || ||||||||||||||| Sbjct 58044 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATA 57995 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| || || || ||| || |||||||||||||| | Sbjct 58450 CCACCCCTGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGTATGTTGTAATCAGCA 58391 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | || || |||||||| || | | |||||| || | || Sbjct 58390 AGTGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 58331 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | |||||| || ||||| Sbjct 58330 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCAC 58272 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || || ||||||||||||||| Sbjct 58271 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATA 58223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328658218517760