Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1689 138 3e-27 seq84 102 2e-16 seq5287 96.9 8e-15 seq238 96.9 8e-15 seq2976 93.3 1e-13 seq1507 93.3 1e-13 seq267 91.5 3e-13 seq1785 87.8 4e-12 >seq1689 Length=72926 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || || |||||||| || || || ||||| || || || |||||| Sbjct 2559 CAGATATTTGTGAAGACCCTTACAGGAAAGACAATAACATTGGAGGTTGAGAGCTCTGAC 2500 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || ||||| || || |||||| || Sbjct 2499 ACTATTGACAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATCCCCCCGGACCAGCAG 2440 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||| ||||||||| | ||||| || | || |||| || |||||| || Sbjct 2439 AGGCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGCACACTGGCAGACTACAACATC 2380 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| ||||||||||| Sbjct 2379 CAGAAGGAGTCTACCCTTCACCTTGT 2354 Score = 116 bits (128), Expect = 9e-21 Identities = 147/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || || || ||||| ||||| || ||||| || |||||| | Sbjct 2782 TTTTGTAAAGACCCTTACTGGCAAGACAATCACGTTGGAGGTTGAAAGCTCCGACACAAT 2723 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| |||||| || || || || || || || ||| || || || Sbjct 2722 TGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCT 2663 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| || || |||||| | || ||||| | || |||| || |||||| ||||||| Sbjct 2662 TATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACACTGGCGGACTACAACATCCAGAA 2603 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 ||||||||||| |||||||| Sbjct 2602 GGAGTCTACTCTCCACCTTGT 2582 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| ||||| || || ||| | || || || || || ||| Sbjct 2331 CAGATCTTTGTGAAGACTCTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCAGAC 2272 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||| || || || || || || || ||| || Sbjct 2271 ACAATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAGCAG 2212 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || ||||| | || ||||| | || ||||| |||||||| || Sbjct 2211 CGACTCATCTTTGCTGGGAAGCAACTCGAGGATGGGCGCACATTGGCTGATTACAATATC 2152 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||||||||||||||| Sbjct 2151 CAGAAGGAGTCTACTCTTCACCTTGT 2126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||||||||||||||| ||||||| ||| || |||||||| || | ||||| || Sbjct 2126 ACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCCAATGTGCGCCCATCCTCG 2185 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || ||||| || || ||||| || || || || Sbjct 2186 AGTTGCTTCCCAGCAAAGATGAGTCGCTGCTG 2217 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||| ||||||| || ||||| |||| || | || ||||| Sbjct 2354 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGTGTGCGGCCGTCTTCA 2413 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||| |||||||| |||| Sbjct 2414 AGCTGCTTTCCAGCGAAGATGAGCC 2438 >seq84 Length=349560 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| ||||||||| |||| Sbjct 21544 AAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCTTCTGACACCATCGACAAC 21603 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || || || |||||| Sbjct 21604 GTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCAGCAGAGGCTGATCTTC 21663 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || | || || |||||| ||||||| ||||| Sbjct 21664 GCTGGCAAGCAGCTTGAGGACGGGCGCACCCTTGCTGACTACAACATCCAGAAGGAGTCC 21723 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 21724 ACCCTTCACCTTGT 21737 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| |||||| || |||| Sbjct 21088 AAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCTTCTGATACCATCGACAAC 21147 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || | ||||||||| Sbjct 21148 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAGCGTCTTATCTTC 21207 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 21208 GCCGGCAAGCAGCTAGAGGACGGGCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCC 21267 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 21268 ACCCTCCACCTGGT 21281 >seq5287 Length=9303 Score = 96.9 bits (106), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 206160 GGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGT 206219 ||| |||||| ||||| || || || || || || || |||||||| |||| || Sbjct 5176 GGCCAAAATG---CAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGAGGT 5232 Query 206220 GGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTT 206279 ||| || ||||| |||| || ||| ||||| || || || || || || Sbjct 5233 GGAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCC 5292 Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 ||||||| || | || ||||||||||| |||||| |||| || || | || | || Sbjct 5293 GCCGGACCAGCAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTCGC 5352 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| |||||| ||||||| ||||| || || ||||| || Sbjct 5353 CGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 5391 >seq238 Length=227787 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||||||||| || || |||||| Sbjct 50476 CAGATTTTTGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCTGAC 50417 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || || ||| ||| || Sbjct 50416 ACGATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 50357 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||| ||||| | || | || || |||||| || Sbjct 50356 CGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCTGACTACAACATC 50297 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 50296 CAGAAGGAGTCCACCCTCCACCTGGT 50271 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||||||||| || || |||||| Sbjct 51516 CAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCTGAC 51457 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || |||||| || Sbjct 51456 ACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAG 51397 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || ||||| | || | || || |||||| || Sbjct 51396 CGTCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTCGCAGACTACAACATC 51337 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 51336 CAGAAGGAGTCCACCCTCCACCTGGT 51311 >seq2976 Length=39079 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||| ||||| || ||||| |||| Sbjct 26302 AAGACCCTGACGGGGAAGACCATCACGTTGGAGGTGGAGTCCTCGGACACCATCGACAAC 26361 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 26362 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTC 26421 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 26422 GCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 26481 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 26482 ACGCTGCACCTGGT 26495 >seq1507 Length=80756 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 30403 AAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 30462 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 30463 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGGCTGATCTTC 30522 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 30523 GCCGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCG 30582 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 30583 ACCCTGCACCTGGT 30596 >seq267 Length=213022 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 |||| || || || || ||| || ||| ||||| || ||||| || || ||||| | Sbjct 31592 TTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATCTTTGCTGGTAAGCAAT 31533 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||||||||| || || || || ||||||||| | ||||||||||| || |||||| | | Sbjct 31532 TGGAAGATGGGAGAACGTTAGCTGATTACAACATTCAGAAAGAGTCGACGCTTCACTTGG 31473 Query 206378 TTTTGAGACT 206387 | |||| || Sbjct 31472 TCCTGAGGCT 31463 >seq1785 Length=68507 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 64675 AAGACCCTCACTGGCAAGACCATCACGCTTGAGGTGGAGTCCTCGGACACCATCGACAAC 64734 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| |||||| || | ||||||||| Sbjct 64735 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTC 64794 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || ||||| | || | || || |||||| ||||||| ||||| Sbjct 64795 GCTGGCAAGCAACTTGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAGGAGTCC 64854 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| || |||| || Sbjct 64855 ACTCTCCACCTCGTCCTGAGGCT 64877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181647756321188