Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq9 190 6e-44 seq3095 168 2e-37 seq2645 152 2e-32 seq1688 132 1e-26 seq748 127 6e-25 >seq9 Length=772998 Score = 190 bits (210), Expect = 6e-44 Identities = 327/472 (69%), Gaps = 16/472 (3%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || ||||| || ||| | || | || |||||||| || | || || | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 | ||| | |||||||||||||| || || || || ||| | |||| | Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC------- 515931 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 ||| | | || || ||||||||| ||||||| || |||||||||||| | ||| Sbjct 515930 ----TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATG 19837 || || || || | | || | || | |||||| | |||| | | ||| ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 19838 GGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTAC 19897 || || ||||||||||||| | | || || ||| ||||||||| |||||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 19898 TCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAG 19956 || ||||| ||| |||| || |||| || ||||| | | ||||| ||||||| || || Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAG 515697 Query 19957 CTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCA 20016 ||||| |||| ||||||||| || |||| ||||| ||||||| ||| | |||||| | Sbjct 515696 TTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGA 515637 Query 20017 AGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGT 20068 | || || ||||| || ||||| || || |||||| | ||||| ||| || Sbjct 515636 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq3095 Length=35243 Score = 168 bits (186), Expect = 2e-37 Identities = 329/479 (69%), Gaps = 18/479 (4%) Strand=Plus/Plus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 19804 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 19863 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 19864 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 19922 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 19923 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 19982 Query 19690 AT-----CGGGAGCCGTCGTTCCGAGCAGCAAT----GCCATCGGACTACACTTCTACCC 19740 || | || ||| | |||| | | | || |||||| | ||||| ||||| Sbjct 19983 ATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC 20042 Query 19741 AATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19800 ||||||||| || ||||||| ||| | ||||| || || || | | || | Sbjct 20043 ----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAAT 20098 Query 19801 GGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTA 19860 || | |||||| | |||| | | ||| ||||| || |||||||||||||| | Sbjct 20099 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 20158 Query 19861 TCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTC 19920 || || || ||| | ||||||||| |||||| || || ||||| |||||||| || | Sbjct 20159 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 20218 Query 19921 TGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTA-TGCCTTT 19977 ||| || ||||| | | |||| ||||||| || || || || ||||||| |||||| Sbjct 20219 TGCTGT-TTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTACAGCCTTT 20276 >seq2645 Length=47068 Score = 152 bits (168), Expect = 2e-32 Identities = 264/378 (70%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | || |||||||| | || |||||||| ||||||| Sbjct 45787 AACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATC 45728 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 45727 CC-TACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGT 45670 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| || |||||||||||||| || || Sbjct 45669 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTAT 45610 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || ||| | |||| | | || || |||||| | || || |||||||||||| Sbjct 45609 CTCTGGTGCCATTATTCCTACTTCTGCGGTG--ATCGGATTGCATTTTTACCCAATTTGG 45552 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| ||| ||||||||||| | ||||| || || || | | || | || | Sbjct 45551 GAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 45492 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 || ||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 45491 CAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 45432 Query 19868 GGAATGAGGCCTTGGATT 19885 || ||| | ||||||||| Sbjct 45431 GGTATGCGTCCTTGGATT 45414 Score = 147 bits (162), Expect = 7e-31 Identities = 263/378 (70%), Gaps = 7/378 (2%) Strand=Plus/Plus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | || |||||||| | || |||||||| ||||||| Sbjct 1038 AACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATC 1097 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 1098 CC-TACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGT 1155 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| || |||||||||||||| || | Sbjct 1156 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTT 1215 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || ||| | |||| | | || || |||||| | || || |||||||||||| Sbjct 1216 CTCTGGTGCCATTATTCCTACTTCTGCGGTG--ATCGGATTGCATTTTTACCCAATTTGG 1273 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| ||| ||||||||||| | ||||| || || || | | || | || | Sbjct 1274 GAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 1333 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 || ||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 1334 CAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 1393 Query 19868 GGAATGAGGCCTTGGATT 19885 || ||| | ||||||||| Sbjct 1394 GGTATGCGTCCTTGGATT 1411 >seq1688 Length=72660 Score = 132 bits (146), Expect = 1e-26 Identities = 151/202 (75%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 20211 ATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTAC 20270 ||||||| ||||| || || ||||||||||| ||| ||||||||| |||||| ||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 20271 ACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTA 20330 ||||||| ||||| ||||| || ||||||| |||||| |||| || || || || Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 20331 CAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTC 20390 | ||||| || || || || |||||||| || ||||| || | | || | | | |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 20391 GTGTCATTGATACTTGGGCTGA 20412 | | || ||||||||||||| Sbjct 24696 GCCTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 127 bits (140), Expect = 6e-25 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 19936 CTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTT 19995 |||||| |||||| || || || || ||| |||| |||| || ||||| ||||| || Sbjct 126731 CTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTT 126672 Query 19996 CAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCT 20055 ||||| ||| | |||||||| || | || ||||| || | ||| || || ||||| | Sbjct 126671 CAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTT 126612 Query 20056 TGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTAC 20115 ||||| |||||||||||||| || || ||||||||||| ||||| |||| |||| || Sbjct 126611 AGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTC-CTTGGTAA 126554 Query 20116 GTCCTCGCTTG-TGCGTGAGACTACTGAA 20143 || | ||| | | ||||| |||||| Sbjct 126553 CCTCTAGTTTGCTCAGGGAGACCACTGAA 126525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148808602815624