Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3095 158 4e-34 seq2645 147 6e-31 seq9 140 1e-28 seq1688 131 5e-26 >seq3095 Length=35243 Score = 158 bits (174), Expect = 4e-34 Identities = 311/455 (68%), Gaps = 19/455 (4%) Strand=Plus/Plus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 19804 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 19863 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 19864 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 19922 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| | | || ||||||||||| || || Sbjct 19923 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 19982 Query 28818 AT-----CGGGAGCCGT----CGTACCGAG--CAGCAATGCCATCGGACTACACTTCTAC 28866 || | || ||| | | |||| | | || || |||||| | ||||| ||| Sbjct 19983 ATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCG--GCGATCGGATTGCACTTTTAC 20040 Query 28867 CCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTT 28926 || ||||||||| || ||||||| ||| | ||||| || || || | | || Sbjct 20041 CC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTA 20096 Query 28927 GTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGC 28986 | || | |||||| | |||| || | ||| ||||| || |||||||||||||| Sbjct 20097 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGT 20156 Query 28987 TATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCA 29046 | || || || ||| | || |||||| ||| ||||| |||||||| || ||||| || Sbjct 20157 TTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 20216 Query 29047 TCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG 29081 |||| |||||| | | |||| | |||||||| Sbjct 20217 ACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 20251 >seq2645 Length=47068 Score = 147 bits (162), Expect = 6e-31 Identities = 263/378 (70%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | || |||||||| | || |||||||| ||||||| Sbjct 45787 AACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATC 45728 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 45727 CC-TACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGT 45670 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| ||| || ||||||||||| || || Sbjct 45669 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTAT 45610 Query 28818 ATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || ||| | | || | | || || |||||| | || || |||||||||||| Sbjct 45609 CTCTGGTGCCATTATTCCTACTTCTGCGGTG--ATCGGATTGCATTTTTACCCAATTTGG 45552 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 |||||| ||| ||||||||||| | ||||| || || || | | || | || | Sbjct 45551 GAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 45492 Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 || ||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 45491 CAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 45432 Query 28996 GGAATGAGGCCGTGGATT 29013 || ||| | || |||||| Sbjct 45431 GGTATGCGTCCTTGGATT 45414 Score = 143 bits (158), Expect = 8e-30 Identities = 262/378 (69%), Gaps = 7/378 (2%) Strand=Plus/Plus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | || |||||||| | || |||||||| ||||||| Sbjct 1038 AACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATC 1097 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 1098 CC-TACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGT 1155 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| ||| || ||||||||||| || | Sbjct 1156 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTT 1215 Query 28818 ATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || ||| | | || | | || || |||||| | || || |||||||||||| Sbjct 1216 CTCTGGTGCCATTATTCCTACTTCTGCGGTG--ATCGGATTGCATTTTTACCCAATTTGG 1273 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 |||||| ||| ||||||||||| | ||||| || || || | | || | || | Sbjct 1274 GAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 1333 Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 || ||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 1334 CAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 1393 Query 28996 GGAATGAGGCCGTGGATT 29013 || ||| | || |||||| Sbjct 1394 GGTATGCGTCCTTGGATT 1411 >seq9 Length=772998 Score = 140 bits (154), Expect = 1e-28 Identities = 312/468 (67%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || ||||| || || | || | || |||||||| || | || ||| | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 ||| | | || ||||||||||| || || || || ||| | | || | Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC------- 515931 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 ||| | | || || ||||||||| ||||||| || |||||||||||| | ||| Sbjct 515930 ----TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | |||||| | |||| || | ||| ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || ||||||||||||| | | || || ||| || |||||| ||| ||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCT 29085 |||||||| || |||| || |||| |||||| | | ||||| | |||||||| | Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 29086 TTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAA 29145 || || | |||||||| || || | || || ||||||| ||| | || ||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 29146 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCT 29193 | || || ||||| || ||||| || || |||||| | || || ||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq1688 Length=72660 Score = 131 bits (144), Expect = 5e-26 Identities = 150/201 (75%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 ||||| ||||| || || ||||||||||||||| |||||| || |||||| ||||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 ||||| ||||| ||||| || ||||||| |||||| |||| || || || ||| Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 29461 ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGT 29520 ||||| || || || || ||||| || || ||||| || | | || | | | ||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 24695 Query 29521 GTCATTAATACTTGGGCTGAT 29541 | || ||||||||||||||| Sbjct 24694 CTTATGAATACTTGGGCTGAT 24674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146645696378088