Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq3095 206 8e-49 seq9 201 3e-47 seq2645 194 5e-45 seq748 113 1e-20 seq1688 111 4e-20 >seq3095 Length=35243 Score = 206 bits (228), Expect = 8e-49 Identities = 321/453 (71%), Gaps = 17/453 (4%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 19805 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 19864 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| || ||||| ||||| ||||| || Sbjct 19865 C-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 19922 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | |||||||||||||| || || Sbjct 19923 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 19982 Query 18909 AT-----CGGGAGCCGTCGTTCCGAGCAGCAAT----GCCATCGGACTACACTTCTACCC 18959 || | || ||| | |||| | | | || |||||| | ||||| ||||| Sbjct 19983 ATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC 20042 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||||||||| || ||||||| ||| | ||||| || || || | | || | Sbjct 20043 ----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAAT 20098 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||| ||||| || |||||||||||||| | Sbjct 20099 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 20158 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| |||||| || |||||||||||||| || || | Sbjct 20159 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 20218 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGG 19172 ||| || ||| | | | || |||||||||| Sbjct 20219 TGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 20251 >seq9 Length=772998 Score = 201 bits (222), Expect = 3e-47 Identities = 330/474 (70%), Gaps = 20/474 (4%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| |||||||| || || ||| |||| |||||||| || | |||||| || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936 || | | |||||||||||||| || || || || ||| | |||| | Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC------- 515931 Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996 ||| | | || || ||||||||| ||||||| || |||||||||||| | ||| Sbjct 515930 ----TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 19056 || || || || | | || | || | |||||| | |||| || | ||| ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 19057 GGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTAC 19116 || || ||||||||||||| | | || || |||| ||||||||| |||||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 19117 TCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAG---GT 19173 |||||||||||| | || || |||| || ||| | | || || ||||||||| || Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 19174 TCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTC 19233 | || | || | ||||||||| || || |||||| ||||||| ||| |||||||| Sbjct 515695 TTCTCT---GATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTC 515639 Query 19234 CAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGT 19287 ||| || || |||||||| ||||| || || |||||| | ||||| ||| || Sbjct 515638 GAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq2645 Length=47068 Score = 194 bits (214), Expect = 5e-45 Identities = 275/378 (73%), Gaps = 9/378 (2%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || || |||||||| ||||| |||||||| ||||||| | Sbjct 45786 ACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCC 45727 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | | ||| | ||| || ||||| |||||||| || || ||||| || Sbjct 45726 C-TACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGT 45670 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || ||| |||||||||||||| || || Sbjct 45669 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTAT 45610 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | || || |||||||||||| Sbjct 45609 CTCTGGTGCCATTATTCCTACTTCTGCGGTG--ATCGGATTGCATTTTTACCCAATTTGG 45552 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| ||| ||||||||||| | ||||| || || || | | || | || | Sbjct 45551 GAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 45492 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 || ||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 45491 CAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 45432 Query 19087 GGGATGCGCCCTTGGATT 19104 || ||||| ||||||||| Sbjct 45431 GGTATGCGTCCTTGGATT 45414 Score = 190 bits (210), Expect = 6e-44 Identities = 274/378 (72%), Gaps = 9/378 (2%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || || |||||||| ||||| |||||||| ||||||| | Sbjct 1039 ACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCC 1098 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | | ||| | ||| || ||||| |||||||| || || ||||| || Sbjct 1099 C-TACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGT 1155 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || ||| |||||||||||||| || | Sbjct 1156 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTT 1215 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | || || |||||||||||| Sbjct 1216 CTCTGGTGCCATTATTCCTACTTCTGCGGTG--ATCGGATTGCATTTTTACCCAATTTGG 1273 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| ||| ||||||||||| | ||||| || || || | | || | || | Sbjct 1274 GAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 1333 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 || ||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 1334 CAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 1393 Query 19087 GGGATGCGCCCTTGGATT 19104 || ||||| ||||||||| Sbjct 1394 GGTATGCGTCCTTGGATT 1411 >seq748 Length=127770 Score = 113 bits (124), Expect = 1e-20 Identities = 114/146 (78%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 |||| |||| || || |||||| ||||||| ||| ||||||||||||| | || || Sbjct 126698 TATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAA 126639 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| | ||| || || ||||| | ||||| |||||||| |||||||| || ||||| Sbjct 126638 CATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATT 126580 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTA 19333 ||||| ||||| |||| |||| || Sbjct 126579 CAGTGCTATGCATAGTTC-CTTGGTA 126555 >seq1688 Length=72660 Score = 111 bits (122), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 19430 ATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTAC 19489 |||| ||||||||||| | || ||||| || || |||||||| |||||| ||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 19490 ATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCA 19549 | ||||| ||||||||||||||| | || || ||||| | || | || | || | Sbjct 24813 ACTTCTT---GGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 19550 CCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTC 19609 | |||||||||||| | ||||| || || || ||||| || | |||| | | | |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 19610 GTGTCATTGATACTTGGGCTGA 19631 | | || ||||||||||||| Sbjct 24696 GCCTTATGAATACTTGGGCTGA 24675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141129645049224