Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3589 96.9 3e-15 seq1824 96.9 3e-15 seq1689 87.8 2e-12 >seq3589 Length=27756 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| ||||||||| ||| || ||| ||| |||||| | Sbjct 17074 AAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCT 17019 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || |||||||| ||| |||||| || | Sbjct 17018 CGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTG 16959 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 16958 GCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGA 16899 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| ||||||||||| ||| Sbjct 16898 CGAGGGTCTGCACTGCGACTTTGCGTGCCTC 16868 >seq1824 Length=71116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCG-AGACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| ||||||||| ||| ||| ||| ||| |||||| | Sbjct 41893 AAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGAGAGCGCTTCGC----CGAGCGGCT 41838 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || |||||||| ||| |||||| || | Sbjct 41837 CGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTG 41778 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 41777 GCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGA 41718 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| |||||||| || ||| Sbjct 41717 CGAGGGTCTGCACTGCGACTTTGCCTGCCTC 41687 >seq1689 Length=72926 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || ||||||| || | ||| | | || || || || |||||||| || || |||| Sbjct 1886 CGTAAGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTA 1945 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| ||| || ||||| || |||| | |||| || | ||| ||||||||||| || ||| Sbjct 1946 CGCCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCT 2005 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || |||| | || | || || | |||||| || | | Sbjct 2006 TCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGC 2065 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || ||||||||||| || | || |||||||| Sbjct 2066 GTGATCGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476543116090080