Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq9 215 6e-51 seq3095 212 7e-50 seq2645 178 1e-39 seq1688 140 4e-28 seq748 125 8e-24 >seq9 Length=772998 Score = 215 bits (238), Expect = 6e-51 Identities = 336/479 (70%), Gaps = 15/479 (3%) Strand=Plus/Minus Query 157758 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCC 157817 ||||| || ||| || |||||||| |||| ||| || | || ||||| || || | Sbjct 516051 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 515995 Query 157818 GCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTC 157877 || || || |||||| | | ||||| ||||| || ||||||||||| || ||| Sbjct 515994 ATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 515935 Query 157878 CTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACG 157937 | ||| | || | || || ||||| || |||||| ||||||||||| | Sbjct 515934 C-------AACTCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 515887 Query 157938 AGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCT 157997 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 515886 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 515827 Query 157998 ATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCT 158057 | |||||||| |||||||||||||| || | || | ||||||| || ||||| Sbjct 515826 CTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTG 515767 Query 158058 GTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCG 158117 ||| ||| |||| ||||| || | || || | ||| || ||| | | || ||| | | Sbjct 515766 CTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTG 515707 Query 158118 GTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC 158177 ||||||| |||||| |||| ||||||| | || |||| ||||||||| |||| ||| Sbjct 515706 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGA 515647 Query 158178 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158236 |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| ||| Sbjct 515646 TTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 212 bits (234), Expect = 7e-50 Identities = 335/477 (70%), Gaps = 15/477 (3%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | ||| |||| ||| | |||||| | || | || ||||||||||| | Sbjct 19797 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 19856 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| ||||| || || |||| ||| ||||||| | Sbjct 19857 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || || || ||| ||||||| | | ||||| |||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 157854 ACATCAT-----CTCTGGTGCAGTTGTTCCTAG----TTCAAACGCAATCGGTCTCCACT 157904 | || || ||||||||| || |||||| ||| || ||||| | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 157905 TCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 157964 | ||||| |||||||| |||||| |||| |||||| | || || || ||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 157965 AACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAAC 158024 | || | || | |||||| | | || | | |||||||| ||||||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 158025 TCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTG 158084 | || |||| | |||||||| || ||||| ||| |||||||| ||||| || || | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 158085 CAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158141 | || | ||| || ||| | | | ||| | |||||||| ||| || ||||||| Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 178 bits (196), Expect = 1e-39 Identities = 278/394 (71%), Gaps = 3/394 (1%) Strand=Plus/Minus Query 157663 CCCGTGGAATAACTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTG 157722 || |||| | |||||||| | ||| |||| ||| | || ||| | || | || || Sbjct 45806 CCTGTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATG 45747 Query 157723 GTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCT 157781 ||| || || ||||||| ||||| || | | ||||| ||||| || || |||||| Sbjct 45746 GTTTGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCT 45688 Query 157782 TCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCA 157841 || |||| || || || || || ||||| || || || || || ||| ||||||| || Sbjct 45687 TCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTAC 45629 Query 157842 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCC 157901 | ||||| ||||| || ||||||||||| || |||||| ||| | ||||| | | Sbjct 45628 TTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGC 45569 Query 157902 ACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTT 157961 | || ||||| || |||||||| ||||| |||| || ||| | || || |||||||||| Sbjct 45568 ATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTT 45509 Query 157962 TCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGG 158021 | || | || | || ||| | | || | | |||||||| |||||||||| Sbjct 45508 ATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGG 45449 Query 158022 AACTCTCTTACCGTTTAGGTATGCGCCCATGGAT 158055 |||| || |||| | |||||||| || ||||| Sbjct 45448 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 172 bits (190), Expect = 6e-38 Identities = 277/394 (70%), Gaps = 3/394 (1%) Strand=Plus/Plus Query 157663 CCCGTGGAATAACTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTG 157722 || |||| | |||||||| | ||| |||| ||| | || ||| | || | || || Sbjct 1019 CCTGTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATG 1078 Query 157723 GTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCT 157781 ||| || || ||||||| ||||| || | | ||||| ||||| || || |||||| Sbjct 1079 GTTTGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCT 1137 Query 157782 TCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCA 157841 || |||| || || || || || ||||| || || || || || ||| ||||||| || Sbjct 1138 TCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTAC 1196 Query 157842 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCC 157901 | ||||| ||||| || |||||||||| || |||||| ||| | ||||| | | Sbjct 1197 TTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGC 1256 Query 157902 ACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTT 157961 | || ||||| || |||||||| ||||| |||| || ||| | || || |||||||||| Sbjct 1257 ATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTT 1316 Query 157962 TCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGG 158021 | || | || | || ||| | | || | | |||||||| |||||||||| Sbjct 1317 ATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGG 1376 Query 158022 AACTCTCTTACCGTTTAGGTATGCGCCCATGGAT 158055 |||| || |||| | |||||||| || ||||| Sbjct 1377 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 140 bits (154), Expect = 4e-28 Identities = 153/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 158382 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 158441 |||| || || ||||| || ||||||||||| ||| ||||||||||| ||||| || | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 158442 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 158501 ||||||| ||||| |||||||| | || ||||||||||| || | || | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 158502 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 158561 | |||||||||||||| || |||||||| |||||||| || | ||||| | || |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 158562 GTGTGTTGAACACCTGGGCAGAT 158584 | | |||| || ||||| ||| Sbjct 24696 GCCTTATGAATACTTGGGCTGAT 24674 >seq748 Length=127770 Score = 125 bits (138), Expect = 8e-24 Identities = 122/156 (78%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 158117 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158176 |||||||| ||| || ||| |||| || | || |||||||||||||| |||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 158177 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158236 |||||||||| ||| | ||||||||||||| ||| || || || || | ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 158237 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158272 || |||||||| || || || ||| |||||||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCAT 126567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572942143521600