Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq9 199 5e-46 seq3095 188 9e-43 seq2645 158 1e-33 seq748 147 3e-30 seq1688 138 1e-27 >seq9 Length=772998 Score = 199 bits (220), Expect = 5e-46 Identities = 332/478 (69%), Gaps = 15/478 (3%) Strand=Plus/Minus Query 181063 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCC 181122 ||||| || ||| || |||||||| |||| ||| || | || || || || || | Sbjct 516051 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 515995 Query 181123 GTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTC 181182 ||| || | |||||| | | ||||| ||||| || ||||||||||| || ||| Sbjct 515994 ATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 515935 Query 181183 CATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATG 181242 || || | |||| || || || || || |||||| ||||| ||||||| Sbjct 515934 CAACT-------CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 515887 Query 181243 AGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTT 181302 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 515886 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 515827 Query 181303 ATGCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCT 181362 | || ||||| ||||| |||||||| || | | | ||||||| || ||||| Sbjct 515826 CTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTG 515767 Query 181363 GTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCG 181422 ||||||| | || ||||| || |||| || ||||||| ||| | | || ||| | | Sbjct 515766 CTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTG 515707 Query 181423 GTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGC 181482 ||||||| ||||||||| | ||||| | || |||| |||||| ||||||| ||| Sbjct 515706 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGA 515647 Query 181483 TTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGC 181540 |||| ||| | | |||||||||||| || |||||||| || |||||||| ||||| || Sbjct 515646 TTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 188 bits (208), Expect = 9e-43 Identities = 328/474 (69%), Gaps = 15/474 (3%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| ||||| || || |||| ||| ||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 181160 CATCAT-----CTCTGGTGCAGTTGTTCCATCTTCCAAC----GCAATTGGTCTTCACTT 181210 || || ||||||||| || |||| | | | | || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 181211 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 181270 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 181271 ACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACT 181330 || | || | |||||| | | || | | || ||||| ||||| |||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 181331 CTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGC 181390 || ||| | |||||||| || ||||| ||||||||| || ||||| || ||||| Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 181391 AGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGC 181444 || ||||||| ||| | | | ||| | |||||||| ||| ||||| || Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 >seq2645 Length=47068 Score = 158 bits (174), Expect = 1e-33 Identities = 266/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||||||||| || |||| |||| | || || | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | || ||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 181340 CTTAGGTATGCGCCCCTGGAT 181360 | |||||||| || ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 >seq748 Length=127770 Score = 147 bits (162), Expect = 3e-30 Identities = 157/206 (76%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 181422 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 181481 |||||||| ||| ||| | | ||| | | || ||||||||||| ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 181482 CTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA 181541 |||| ||||| ||| |||||||||| || | |||||| || ||||| || ||||| || Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 181542 GGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTC 181601 |||||||| || ||||| || |||||||| ||||| |||| ||||| || ||| | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 181602 GTCCGTGAGACGACTGAAACTGAGTC 181627 || | ||||| ||||||||||| || Sbjct 126542 CTCAGGGAGACCACTGAAACTGAATC 126517 >seq1688 Length=72660 Score = 138 bits (152), Expect = 1e-27 Identities = 151/200 (76%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 181689 GGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 181748 ||||| |||||||| || ||||||||||||||| ||||||||||| ||||| | ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 181749 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 181808 ||||| || || ||||||||| | || ||||||||||| || | || | || || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 181809 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGT 181868 |||||||| ||||| ||||| ||||| |||||||| ||| | | || | ||||| || Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 24695 Query 181869 GTCCTCAACACCTGGGCAGA 181888 | | || || ||||| || Sbjct 24694 CTTATGAATACTTGGGCTGA 24675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614529801875840