Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3095 214 3e-50 seq2645 206 4e-48 seq9 179 5e-40 seq1688 134 2e-26 seq748 100 4e-16 >seq3095 Length=35243 Score = 214 bits (236), Expect = 3e-50 Identities = 312/438 (71%), Gaps = 15/438 (3%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||||||||||| | ||||| ||||| || || || Sbjct 19819 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 19878 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||||||| | | ||| || ||||| || || || || || Sbjct 19879 GCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 19937 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACA-----ACATCATCTCTGGTGCA 174662 ||||| || || ||||||| | | |||||||||| | || ||||||||||| Sbjct 19938 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCC 19997 Query 174663 GTTGTT----CCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGC 174718 || || |||| ||| || ||||| | ||||| |||| ||||||||| || Sbjct 19998 ATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGC 20053 Query 174719 CACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCT 174778 | | || || ||| | ||||| || ||||||| | ||| |||| | |||||| | Sbjct 20054 ATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTT 20113 Query 174779 TATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAG 174838 ||||| | |||||||| |||||||||||||| || ||| | |||||| | Sbjct 20114 ACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCG 20173 Query 174839 ACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGT 174898 |||||||| ||| ||||| || || || |||||||| ||| | || || ||| | | Sbjct 20174 TCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGAT 20233 Query 174899 CTATCCTTTCGGTCAAGG 174916 | ||| | |||||||| Sbjct 20234 TGACCCTATTGGTCAAGG 20251 >seq2645 Length=47068 Score = 206 bits (228), Expect = 4e-48 Identities = 264/360 (73%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | |||||||||||| |||| ||||| || ||| | ||||| ||||| || || || Sbjct 45772 ACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACC 45713 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 ||||| | ||| || |||||||| ||| | | || || ||||| || || || || || Sbjct 45712 ACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTAT 45655 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || ||||||| || | ||||||||||| || ||||||||||| || | Sbjct 45654 TCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 45595 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| | ||||| | || || |||||||| |||||||| || || | || Sbjct 45594 TCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGA 45535 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 |||||| | ||||| |||||||||| | ||| |||| | || ||| | ||||| | Sbjct 45534 TGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGT 45475 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 45474 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 201 bits (222), Expect = 2e-46 Identities = 263/360 (73%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | |||||||||||| |||| ||||| || ||| | ||||| ||||| || || || Sbjct 1053 ACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACC 1112 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 ||||| | ||| || |||||||| ||| | | || || ||||| || || || || || Sbjct 1113 ACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTAT 1170 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || ||||||| || | ||||||||||| || |||||||||| || | Sbjct 1171 TCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTAT 1230 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| | ||||| | || || |||||||| |||||||| || || | || Sbjct 1231 TCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGA 1290 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 |||||| | ||||| |||||||||| | ||| |||| | || ||| | ||||| | Sbjct 1291 TGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGT 1350 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 1351 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq9 Length=772998 Score = 179 bits (198), Expect = 5e-40 Identities = 320/467 (69%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 174561 TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTA 174620 || |||||||| ||| | | ||| || | | || || || || || | ||| || | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTCC--AATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 174621 GCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAAC 174680 |||||| | | ||||||||||| || ||||||||||| || |||| ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 515931 Query 174681 GCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTAC 174740 | || | || || |||||||| |||||| || | || || |||||| | ||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 174741 AACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATG 174800 || |||||||||| | ||| |||| | |||||| | ||||| | |||||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 174801 GGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATAC 174860 || |||||||||||||| || || | |||||| |||||||| ||| ||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 174861 TCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCA 174920 || || || ||| |||| ||| | || || ||| | | || ||| | |||||||| Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 174921 TTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAA 174980 ||||| || | ||||| || || |||| ||| || ||||||| ||| | || ||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 174981 GCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | ||| || |||||| | ||||| || || |||||||| || || || Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq1688 Length=72660 Score = 134 bits (148), Expect = 2e-26 Identities = 152/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 175174 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCC 175233 |||| || || ||||| || ||||||||||| ||| ||||||||||| || || | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 175234 ACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCA 175293 ||||||| || || ||||| || | || ||||||||||| || | ||| || | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 175294 CAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTA 175353 | |||||||||||||| ||||||||||| |||||||| ||||| | || | |||||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 175354 GAGTATTGAACACCTGGGCGGAT 175376 | | |||| || ||||| ||| Sbjct 24696 GCCTTATGAATACTTGGGCTGAT 24674 >seq748 Length=127770 Score = 100 bits (110), Expect = 4e-16 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||| | || || |||||||| || ||||||| ||| | || ||||| ||| | || ||| Sbjct 126697 ATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAAC 126638 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052 ||| | | ||| || || ||||| || || || || ||||| ||||| ||||| | ||| Sbjct 126637 ATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTCCTA-TTC 126579 Query 175053 TCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAG 175112 || |||||| |||| | || |||||| | || | ||||| ||||||||||| Sbjct 126578 AGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTGAA 126519 Query 175113 TC 175114 || Sbjct 126518 TC 126517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729825329556640