Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq3095 197 2e-45 seq9 190 2e-43 seq2645 176 5e-39 seq748 134 2e-26 seq1688 129 7e-25 >seq3095 Length=35243 Score = 197 bits (218), Expect = 2e-45 Identities = 330/474 (70%), Gaps = 15/474 (3%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| || || |||| ||| ||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 178028 CATCAT-----CTCTGGTGCAGTTGTTCCATCTTCCAAC----GCAATTGGTCTTCACTT 178078 || || ||||||||| || |||| | | | | || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 178079 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 178138 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 178139 ACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACT 178198 || | || | |||||| | ||||| | | || ||||| |||||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 178199 TTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGC 178258 | | |||| | |||||||| || ||||| ||| ||||| || ||||| || ||||| Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 178259 AGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGC 178312 || | || || ||| || | | ||| | |||||||| |||||||| || Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 >seq9 Length=772998 Score = 190 bits (210), Expect = 2e-43 Identities = 330/478 (69%), Gaps = 15/478 (3%) Strand=Plus/Minus Query 177931 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCC 177990 ||||| || ||| || |||||||| |||| ||| || | || || || || || | Sbjct 516051 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 515995 Query 177991 GTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTC 178050 ||| || | |||||| | | ||||| ||||| || ||||||||||| || ||| Sbjct 515994 ATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 515935 Query 178051 CATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATG 178110 || || | |||| || || || || || |||||| ||||| ||||||| Sbjct 515934 CAACT-------CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 515887 Query 178111 AGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCT 178170 | ||| | || || |||||||||| | || | || | |||||| | ||||| | Sbjct 515886 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 515827 Query 178171 ATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCT 178230 | || ||||| ||||||||||||||| | | || | ||||||| || ||||| Sbjct 515826 CTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTG 515767 Query 178231 GTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCG 178290 ||| ||| | || ||||| || |||| || | || || ||| || | || ||| | | Sbjct 515766 CTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTG 515707 Query 178291 GTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGC 178350 ||||||| || ||||| | ||||| | || |||| |||||| ||||||| ||| Sbjct 515706 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGA 515647 Query 178351 TTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGC 178408 |||| ||| | | ||| |||||||| || ||||| || || |||||||| ||||| || Sbjct 515646 TTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq2645 Length=47068 Score = 176 bits (194), Expect = 5e-39 Identities = 270/381 (71%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||||||||| || |||| |||| | || || | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | || ||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 178208 TTTAGGTATGCGCCCCTGGAT 178228 | | |||||||| || ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 Score = 172 bits (190), Expect = 7e-38 Identities = 269/381 (71%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| || || Sbjct 1092 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 1149 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 1150 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 1209 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || |||||||||| || |||| |||| | || || | || || || || || Sbjct 1210 TATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 1269 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 1270 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 1329 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | || ||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 1330 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1389 Query 178208 TTTAGGTATGCGCCCCTGGAT 178228 | | |||||||| || ||||| Sbjct 1390 TCTGGGTATGCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 134 bits (148), Expect = 2e-26 Identities = 154/206 (75%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 178290 GGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 178349 |||||||| |||||| | | ||| | | || ||||||||||| ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 178350 CTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCA 178409 |||| ||||| ||| | |||||||| || | ||| || || ||||| || ||||| || Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 178410 GGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTC 178469 ||||||||||| ||||| || |||||||| ||||| |||| ||||| || ||| | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 178470 GTTCGTGAAACGACTGAAACAGAATC 178495 | | || || |||||||| ||||| Sbjct 126542 CTCAGGGAGACCACTGAAACTGAATC 126517 >seq1688 Length=72660 Score = 129 bits (142), Expect = 7e-25 Identities = 125/160 (78%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 178555 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGC 178614 |||| || || ||||| || ||||||||||||||| ||||||||||| ||||| | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 178615 ACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCA 178674 ||||||| || || ||||||||| | || ||||||||||| || | || | || | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 178675 CCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 | |||||||| ||||| ||||| ||||| |||||||| || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605923031528640