Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq9 199 4e-46 seq3095 183 3e-41 seq2645 154 2e-32 seq1688 143 3e-29 seq748 125 8e-24 >seq9 Length=772998 Score = 199 bits (220), Expect = 4e-46 Identities = 321/461 (70%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 158479 TCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 158538 |||||||| |||| ||| || | || || || || || | ||| || | ||||| Sbjct 516034 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 158539 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTG 158598 | | | ||||| ||||| || ||||||||||| || | |||||| | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTT-------TCCAACTCGATTG 515924 Query 158599 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTG 158658 || || || || || |||||| ||||| |||||||| ||| | || || |||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 158659 GTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTG 158718 |||||| | || | || | |||||| | | || | | |||||||| |||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 158719 AATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCAC 158778 | ||||||||| | | | | ||||||| || ||||| ||| ||| |||| || | Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 515749 Query 158779 CAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCG 158838 | || | || || ||||||| ||| | | || ||| | |||||||| |||||| | Sbjct 515748 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 515689 Query 158839 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 158898 ||| ||||||| | || |||| ||||||||| |||| ||| |||||||| | | ||| | Sbjct 515688 ATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 515629 Query 158899 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158939 |||||||||||||||| || || || ||| | ||||| ||| Sbjct 515628 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 183 bits (202), Expect = 3e-41 Identities = 328/476 (69%), Gaps = 15/476 (3%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||| || || |||| ||| ||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 158558 CATCAT-----CTCTGGTGCAGTTGT----ACCATCTTCCAACGCAATTGGTCTTCACTT 158608 || || ||||||||| || | ||| |||| || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 158609 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 158668 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 158669 ACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACT 158728 || | || | |||||| | | || | | |||||||| ||||| |||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 158729 TTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGC 158788 | | ||| | |||||||| || ||||| ||| |||||||| || || || || || Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 158789 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158844 || ||||||| ||| | | | ||| | |||||||| ||| || ||||||| Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 5/167 (3%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||||| | | |||| |||||||||||| | || ||||| || Sbjct 21346 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 21287 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCT----TACTGGAACAAC 160014 || | || |||| ||||||| | ||| | || |||||| | ||| || || || Sbjct 21286 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 21227 Query 160015 TTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCT-ATCTT 160060 ||| | ||| ||||||||||||||| | |||||||||| ||||| Sbjct 21226 TTTTGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 21180 >seq2645 Length=47068 Score = 154 bits (170), Expect = 2e-32 Identities = 265/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | |||| ||||| || || |||||||| |||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || |||| | || || | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | || ||| | | || | | |||||||| ||||| ||||||||| | ||| Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 158738 CTTAGGTATGCGCCCCTGGAT 158758 | |||||||| || ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 >seq1688 Length=72660 Score = 143 bits (158), Expect = 3e-29 Identities = 154/203 (76%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 159085 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 159144 ||||||| || ||||| || ||||||||||| ||| ||||||||||| ||||| || | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 159145 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 159204 ||||||| ||||| |||||||| | || ||||||||||| || | || | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 159205 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 159264 | |||||||||||||| || |||||||| |||||||| || | ||||| | || |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 159265 GTGTGTTGAACACCTGGGCAGAT 159287 | | |||| || ||||| ||| Sbjct 24696 GCCTTATGAATACTTGGGCTGAT 24674 >seq748 Length=127770 Score = 125 bits (138), Expect = 8e-24 Identities = 122/156 (78%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 158820 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158879 |||||||| ||| || ||| |||| || | || |||||||||||||| |||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 158880 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158939 |||||||||| ||| | ||||||||||||| ||| || || || || | ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 158940 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 || |||||||| || || || ||| |||||||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCAT 126567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552394679146240