Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq9 228 1e-54 seq3095 214 2e-50 seq2645 194 2e-44 seq1688 127 2e-24 seq748 127 2e-24 >seq9 Length=772998 Score = 228 bits (252), Expect = 1e-54 Identities = 339/479 (71%), Gaps = 15/479 (3%) Strand=Plus/Minus Query 178943 CAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCC 179002 ||||| || ||| || | || ||| | ||||| ||| | |||||||| || || | Sbjct 516051 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTC 515995 Query 179003 GTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCC 179062 ||| || | |||||| | | ||||||||||| || ||||||||||| || | | Sbjct 515994 ATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 515935 Query 179063 CAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATG 179122 ||| | | |||| || || ||||| || |||||| ||||| || |||| Sbjct 515934 CAACT-------CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 515887 Query 179123 AGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCT 179182 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 515886 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 515827 Query 179183 ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCT 179242 | |||||||| ||||||||||||||| || | |||| ||||||| ||| ||||| Sbjct 515826 CTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTG 515767 Query 179243 GTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCG 179302 ||||||| | || || || || | ||||| | ||| || ||| | | || ||| | | Sbjct 515766 CTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTG 515707 Query 179303 GTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC 179362 ||||||| ||||||||||| ||||||| | || |||| ||||||||| |||| ||| Sbjct 515706 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGA 515647 Query 179363 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 179421 |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| ||| Sbjct 515646 TTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 214 bits (236), Expect = 2e-50 Identities = 335/476 (70%), Gaps = 15/476 (3%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | || ||| | || | || ||||||||||| || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | |||||| | || || || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | ||||||||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 179040 CATCAT-----CTCTGGTGCTGTTGTCCCAAG----TTCAAACGCAATTGGTCTACACTT 179090 || || ||||||||| || | || | ||| || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 179091 CTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 179150 ||||| |||||||| ||||| | ||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 179151 ACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 179210 || | || | |||||| | | || | | |||||||| |||||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 179211 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGC 179270 | || |||||| ||||||||||| ||||| ||||||||| || || || || || || Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 179271 TGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTA 179326 ||| | ||| || ||| | | | ||| | |||||||| ||| |||||||||| Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 194 bits (214), Expect = 2e-44 Identities = 280/391 (72%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 178851 GTGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTT 178910 ||||| || |||||| | ||| |||| |||| | |||||| | || | || ||||| Sbjct 45803 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTT 45744 Query 178911 CGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCG 178969 || || ||||||| ||||| || | | ||||| ||||| || || | || ||| Sbjct 45743 TGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 45685 Query 178970 TAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179029 | ||||| ||||| || |||||||| || || ||||| || || ||||||| || | | Sbjct 45684 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 45626 Query 179030 ATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACT 179089 |||||||||| || ||||||||||| || | || | ||| | || || | || | Sbjct 45625 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 45566 Query 179090 TCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCC 179149 | ||||| || |||||||| |||||| | ||||| ||| | || || |||||||||| Sbjct 45565 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 45506 Query 179150 AACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAAC 179209 | || | || | || ||| | | || | | |||||||| ||||||||||||| Sbjct 45505 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 45446 Query 179210 TTTCTTACCGTCTAGGTATGCGTCCATGGAT 179240 || || |||||| ||||||||||| ||||| Sbjct 45445 TTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 190 bits (210), Expect = 2e-43 Identities = 279/391 (71%), Gaps = 3/391 (1%) Strand=Plus/Plus Query 178851 GTGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTT 178910 ||||| || |||||| | ||| |||| |||| | |||||| | || | || ||||| Sbjct 1022 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTT 1081 Query 178911 CGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCG 178969 || || ||||||| ||||| || | | ||||| ||||| || || | || ||| Sbjct 1082 TGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 1140 Query 178970 TAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179029 | ||||| ||||| || |||||||| || || ||||| || || ||||||| || | | Sbjct 1141 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 1199 Query 179030 ATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACT 179089 |||||||||| || |||||||||| || | || | ||| | || || | || | Sbjct 1200 ATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 1259 Query 179090 TCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCC 179149 | ||||| || |||||||| |||||| | ||||| ||| | || || |||||||||| Sbjct 1260 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 1319 Query 179150 AACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAAC 179209 | || | || | || ||| | | || | | |||||||| ||||||||||||| Sbjct 1320 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 1379 Query 179210 TTTCTTACCGTCTAGGTATGCGTCCATGGAT 179240 || || |||||| ||||||||||| ||||| Sbjct 1380 TTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 127 bits (140), Expect = 2e-24 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 179557 GTCGCAGC-ACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTC 179615 ||||||| | |||| || || ||||| || |||||||||||||| || |||||||| Sbjct 24884 GTCGCAGTGAAATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTC 24825 Query 179616 ACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCT 179675 || ||||| |||||||| ||||| ||||| || | || ||||||||||||||| | Sbjct 24824 TCGTTCTTTACACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTT 24768 Query 179676 TGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGA 179735 || | || ||||| |||||||| || |||||||| |||||||| || | |||| Sbjct 24767 AGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 24708 Query 179736 CGGTCAAGGACGTGTCCTTAACACATGGGCGGA 179768 | ||||| || | | || || ||||| || Sbjct 24707 TAGCCAAGGTCGCCTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 127 bits (140), Expect = 2e-24 Identities = 122/155 (79%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 179302 GGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 179361 |||||||| ||| ||| ||| |||| || | || |||||||||||||| |||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 179362 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 179421 |||||||||| ||| | ||||||||||||| ||| || || || || | ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 179422 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 179456 || |||||||| || || || ||| ||||||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 126568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610242414416640