Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1871 93.3 6e-14 seq209 93.3 6e-14 seq1824 89.7 7e-13 seq2074 86.0 9e-12 seq3589 84.2 3e-11 >seq1871 Length=66875 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| | || | | ||| |||| ||| || Sbjct 39527 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCG 39586 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||||||||| || | || |||||||| || || Sbjct 39587 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 39646 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 39647 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 39706 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 39707 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 39747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||| || | || || || || || || ||||| | ||| | ||||| Sbjct 39849 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 39908 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| || || ||||| || || | ||| || || | | || | ||| || Sbjct 39909 GTATGTTTGGATGGCAGATTCAATGTCATCCATATGTATCCCCACTGAAACTCTCATTAA 39968 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| |||| ||| || ||| | | || || ||||| || | || || Sbjct 39969 CATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCGAG 40028 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||| |||||||| |||| || |||||| || ||||||||||| Sbjct 40029 AGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 40076 >seq209 Length=235896 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| | || | | ||| |||| ||| ||| Sbjct 50839 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 50898 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||||||||| || | || |||||||| | || Sbjct 50899 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAGCTGAA 50958 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 50959 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 51018 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 51019 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 51059 >seq1824 Length=71116 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 41690 GCAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 41749 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || || || |||||||| || ||||| ||| |||||||| ||||||| Sbjct 41750 GCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAAGA 41808 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 41809 AGATGCCCTCGAC 41821 >seq2074 Length=58204 Score = 86.0 bits (94), Expect = 9e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 21808 GCACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 21867 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGA 39734 || ||||| || || || || |||||||| || ||||| ||| || || || || |||| Sbjct 21868 GCCTGGCATGAGCCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAACGAGCCCGAGAAGA 21926 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG 39775 ||||||| || || || || || ||||| | |||| || Sbjct 21927 AGATGCCCTCGACGCAGGCGAACGCGACAAGACGCTCTGCG 21967 >seq3589 Length=27756 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 16871 GCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 16930 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || || || |||||||| || ||||| ||| |||||||| ||||||| Sbjct 16931 GCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAAGA 16989 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 16990 AGATGCCCTCGAC 17002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686810675077920