Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1933 111 2e-19 seq2074 109 7e-19 seq2059 109 7e-19 seq124 109 7e-19 seq58 89.7 6e-13 seq209 84.2 3e-11 >seq1933 Length=69095 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| || || ||| | ||||| | || |||||||| || Sbjct 52925 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 52866 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || || || | ||||| ||||||||||| || | | |||||| | Sbjct 52865 ATAACAATTATTCCGGTGTTTCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTGAGG 52806 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || || || || ||||||||| | | ||||| | | ||| | || |||||| Sbjct 52805 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCGCA 52746 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || || || || || ||| || ||| | | ||| ||||| Sbjct 52745 TCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGCCTTCTTAAACAGATCA 52686 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || |||| |||||| ||||| ||||||||||||||||| Sbjct 52685 CGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAA 52645 >seq2074 Length=58204 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || ||||||||||| || Sbjct 21823 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCATGAGCCC 21882 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 21883 GCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGCA 21942 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || ||||| | ||| || || |||||| Sbjct 21943 GGCGAACGCGACAAGACGCTCTGCGAAG 21970 >seq2059 Length=61725 Score = 109 bits (120), Expect = 7e-19 Identities = 216/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 ||||||| ||||| |||||||| | || ||||| || || || |||||||| ||| | Sbjct 2239 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 2180 Query 11598 G-CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | ||||||| || ||| | || || |||||||||||||||||||||||||| Sbjct 2179 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 2121 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | || | || ||||| || | ||||| ||||| ||||| Sbjct 2120 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 2061 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||| | ||| || || | | ||| | ||| || ||| || || | || || Sbjct 2060 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 2001 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 | || ||| ||||||||||| || || || || || || || |||| ||| || Sbjct 2000 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1941 Query 11837 CGGGGGATCTTGGCACC 11853 ||||||||||| || Sbjct 1940 TTTGGGATCTTGGCTCC 1924 >seq124 Length=296087 Score = 109 bits (120), Expect = 7e-19 Identities = 217/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 ||||||| |||||||| || || | || ||||| || || || ||||| || ||| | Sbjct 172559 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 172616 Query 11598 GCATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGA 11651 ||||||| |||| || ||| | || || || || |||||||||||||||| Sbjct 172617 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 172672 Query 11652 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 |||| || || || | ||| | || ||||| || | ||||| ||||| | Sbjct 172673 CAATGCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGA 172732 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||| ||||| | ||| || || | | ||||| ||| || ||| || || | | Sbjct 172733 CACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCT 172792 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 | || |||| ||| || || ||||| || || || || || ||| ||| |||| ||| Sbjct 172793 CCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGAGGC 172852 Query 11832 CGCCTCGGGGGATCTTGGCACC 11853 || |||||||||||| || Sbjct 172853 ATCCCTTGGGGATCTTGGCTCC 172874 >seq58 Length=393800 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/251 (68%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCC 11548 ||||| | || || ||||| |||||||| | || ||||| | ||||| |||||| Sbjct 351637 ATATCAGCTCGGTTGGTGGCAGCAATAACAATTATTCCAGTGTTCCCTTCAAAACCATCC 351696 Query 11549 ATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC- 11607 |||||||| | | || || | || || || || ||||||||| | |||||| Sbjct 351697 ATCTCGGTCAAAAGCTGGTTCAGGGTCTGCTCCCTTTCATCATTTCC------ACCACCG 351750 Query 11608 --AGCACTGCGT---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 | || | | | ||| | || || |||||||| ||||||| || || || || ||| Sbjct 351751 ATACCAGTTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGT 351810 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | ||| ||||| || || | ||||| ||||| |||||| Sbjct 351811 GCATTCTCCTTGGCCTTCTTAAACAGATCACGGACACGGGATGCACCAACACCGACAAAC 351870 Query 11723 ATCTCCACAAA 11733 |||||||| || Sbjct 351871 ATCTCCACGAA 351881 >seq209 Length=235896 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 || ||| || || || |||||||||||||| || ||||||| || || | ||| | Sbjct 51146 CACCTGGGGCCTGGGAGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCG 51205 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 || |||||| | |||||| | | | |||| |||||||| ||| ||| || || | Sbjct 51206 CTGAGACATCAGATGGTATGTTTTGATGGCAGATTCAATGTCATCCTTGTGTATCCCCAC 51265 Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 112116 || || | ||| ||||||| ||||| |||| | | | ||| | ||| || ||| Sbjct 51266 TGAAACTCTCATTAACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGC--TTCAAG 51323 Query 112117 A--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || | |||| || || |||| |||||||| || |||| |||||| Sbjct 51324 AGGTAAGACCTCTCCAGAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCC 51375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627942285628800