Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1933 140 4e-28 seq2074 136 5e-27 seq3589 131 2e-25 seq1824 129 7e-25 seq58 125 8e-24 seq124 87.8 2e-12 seq234 84.2 3e-11 seq2059 82.4 9e-11 >seq1933 Length=69095 Score = 140 bits (154), Expect = 4e-28 Identities = 274/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 52925 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 52866 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| || || |||||| | |||||||||||||||| ||||||||||| || | Sbjct 52865 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 52808 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 52807 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 52748 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 9762 ||||||| ||||||| || || ||||| || ||| || | | | |||| ||| || Sbjct 52747 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTC-CTTG-GCCTTCTTAAACAG 52690 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||| || || || ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 52689 ATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATA 52631 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| | Sbjct 52630 TAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAG 52571 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 | || || ||| | || ||| ||||| ||||| Sbjct 52570 TCCCAGGAGGACCAACAAGCAGGACACCTTTAGGAAT 52534 >seq2074 Length=58204 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || || || Sbjct 21970 CTTCGCAGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 21911 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct 21910 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGA 21851 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 21850 GCTCATCTCCCGCGACGAGGGCCTGCAC 21823 >seq3589 Length=27756 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 17033 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 16974 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 16973 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 16914 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||| ||||| || |||||||| || ||| || |||||| Sbjct 16913 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 16874 >seq1824 Length=71116 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 41852 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 41793 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 41792 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 41733 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| || |||||||| || ||| || ||||| Sbjct 41732 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 41694 >seq58 Length=393800 Score = 125 bits (138), Expect = 8e-24 Identities = 257/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 351601 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 351660 Query 9587 ATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || |||| || || || ||| | ||||||||||||||||| |||||||| ||||| | Sbjct 351661 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 351719 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 9699 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 351720 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 351773 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 9757 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 351774 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 351831 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || ||||| || ||||| || || ||||| |||||||||||||| || | | | | Sbjct 351832 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCC 351891 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 351892 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 351950 Query 9877 ACCCGTACCTGG 9888 ||| || || || Sbjct 351951 ACCGGTCCCAGG 351962 >seq124 Length=296087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 217/327 (66%), Gaps = 22/327 (7%) Strand=Plus/Plus Query 9612 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9671 |||| || |||||||| |||| || |||||||| || || |||| || || || | Sbjct 172559 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 172616 Query 9672 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9725 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 172617 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 172672 Query 9726 CGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 9781 | ||||| || ||| || || | || ||||| |||| || | || Sbjct 172673 CAATGCACGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCCTGACCCTGGATGCA 172728 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 9841 || ||||| ||||| | ||| || || | | ||| | || || |||||| || Sbjct 172729 CCGACACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCG 172788 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 9901 | || || || | ||| || || || ||||| ||||| || || ||| ||| ||||| Sbjct 172789 GCCTCCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGG 172848 Query 9902 AGGGCACCTCGT-GGAATCTTGGCGCC 9927 | |||| | | | || |||||||| || Sbjct 172849 A-GGCATCCCTTGGGGATCTTGGCTCC 172874 >seq234 Length=229189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 7283 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 7342 ||||| | |||||| || || ||| |||| |||||| ||||| | | | ||||| || Sbjct 188519 CCACAGAGCGAGGACACGCCGTTCCACCCGCGCTCGCCCTACGCCGCCGCCAAGGTCGCC 188460 Query 7343 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 7402 || || ||| | | || ||||| ||| | ||||| || || || ||| ||| | Sbjct 188459 GCGCACTGGTACACCGTCAACTACCGAGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTG 188400 Query 7403 CTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCAC 7446 ||||||||||| || |||||| | || |||| |||| ||||| Sbjct 188399 CTCTTCAACCACGAGTCACCGCGCCGCGGTGAGAACTTCGTCAC 188356 >seq2059 Length=61725 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/317 (66%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 9612 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9671 |||| || ||||| || || | || |||||||| || || |||| ||||| || | Sbjct 2239 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 2180 Query 9672 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | ||||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 2179 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 2121 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || || || | ||| || ||||| |||| || | || || ||||| Sbjct 2120 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 2061 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 2060 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 2001 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 | | ||| |||||||| || || || || || || || || |||||||| || Sbjct 2000 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1941 Query 9911 CGTGGAATCTTGGCGCC 9927 ||| |||||||| || Sbjct 1940 TTTGGGATCTTGGCTCC 1924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583177481194720