Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2074 235 6e-57 seq3589 197 2e-45 seq1824 181 1e-40 >seq2074 Length=58204 Score = 235 bits (260), Expect = 6e-57 Identities = 583/865 (67%), Gaps = 35/865 (4%) Strand=Plus/Minus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 ||||||| | | |||| | || ||||| || | | ||| |||||| ||| |||||| Sbjct 22372 GTACCCGCAGATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGTTCTGGACCGCCGAGGA 22313 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGCA 59689 | | |||||| ||| ||| || | | |||||| |||||| ||||||| || Sbjct 22312 GGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCA 22253 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 |||||| || || ||||||||||| ||| || || || ||| | || || | Sbjct 22252 CTTCATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCT 22193 Query 59750 AGACAT----GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | ||| || |||||| | |||||||| || ||||||||| | Sbjct 22192 GG-CGTCGCGGTTCATGTCC---GACGTCCAGGTCGCCGAGGCGCGCGCGTTCTACGGCT 22137 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || ||| |||||||| |||| ||||||||| || | || | | Sbjct 22136 TCCAGATCGC-CATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTAC 22078 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | || ||||| |||||||||||| |||||| || Sbjct 22077 ATCCGCGACGGCGCGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTCCCCGCCGTG 22018 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982 | || || || ||| |||||| ||||| ||| | | |||| || ||| | | Sbjct 22017 CGCCGCAAGGCCGAGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGC--TTCGCAGAGC 21960 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 |||| | || || || ||||| || || ||||||||||| ||||||||||| || || | Sbjct 21959 GTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCGCCATCT 21900 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| || || || |||||||| ||||| | |||||||||||||| || |||| Sbjct 21899 TCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAGCTCATCTCCC 21840 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAA 60160 | ||||||||||| || || || || ||| | ||||| | ||| | || Sbjct 21839 GCGACGAGGGCCTGCACTGCGACTTCGC-GTGCCTTCTCTACGACCTCCTCCGCGTCAAG 21781 Query 60161 ATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGA 60217 || | ||| | | | | |||| || | | | | | || | ||| |||| Sbjct 21780 CTGGACGAGTCCCGCG---TCCGCGAGATCGTCGCCGACGCCGT-CGACATCGAGCGCGA 21725 Query 60218 GTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCA 60277 |||| || || |||||||| ||| |||| | || ||| ||| | |||| || Sbjct 21724 GTTCGTCTGCGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCTTATGAGCCA 21665 Query 60278 GTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGGACCA-ATTT 60333 |||| | |||| ||||| |||||| || ||||| ||||| | | | | || | Sbjct 21664 GTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGC----TTTGGGGCACAAGAAGATGT 21609 Query 60334 ACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACT 60393 || ||| || || ||||||||||||||| |||||| || | || |||||||||| Sbjct 21608 ACAACGTCGCCAATCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGACCAACT 21549 Query 60394 TCTTTGAGAAGCGGGTCGGGGATTA 60418 |||| |||||||| ||||| || || Sbjct 21548 TCTTCGAGAAGCGCGTCGGCGAGTA 21524 >seq3589 Length=27756 Score = 197 bits (218), Expect = 2e-45 Identities = 559/840 (67%), Gaps = 29/840 (3%) Strand=Plus/Minus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || ||||| ||| | | || |||||| ||| ||| ||| | |||||| ||| ||| | Sbjct 17413 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 17354 Query 59655 AAGGATTGGGACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 | |||||| |||||| |||||||| || |||||| || || || Sbjct 17353 CGCCACTGGGACGCCGCGCTCAACCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCT 17294 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT----GAACTTTTCCAA 59767 |||||||| || || || || ||| | || || | | | | | | | ||| Sbjct 17293 TTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGG-CGTCGCGGTTCATGTCC-- 17237 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 || |||||| | |||||||| || | || |||| | ||| ||| || |||| | Sbjct 17236 -GACGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGC-CATCGAGAACA 17179 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 ||||||| |||| ||||||||| || | || | | || || | ||||||| Sbjct 17178 TCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGG 17119 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | |||||||| ||||||||||| |||||| || | || || || ||||||| Sbjct 17118 ACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCA 17059 Query 59947 TGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 ||| ||||| ||| | | |||| || || | || ||| | || || || ||||| Sbjct 17058 TGCGCTGGATCGAGGGCGGCGAGCGC--TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGT 17001 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || |||||||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 17000 CGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCT 16941 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGA 60124 |||||||||||| | ||||||||||||||| || ||||| |||||||| || || || Sbjct 16940 CATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGA 16881 Query 60125 GTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCAC 60182 ||||| ||| | | || | | | | | | | || | | | | | | | Sbjct 16880 CTTTGC-GTGCCTC-CTCTACGATCTTCTCCGCGTCAAGCTCGACGAGTCGCGCGTCCGC 16823 Query 60183 AAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 |||| || | | | | | || | ||| |||||||| || || ||||| || || Sbjct 16822 GAGATAGTCGCCGACGCCGT-CGATATAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTG 16764 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | || | || ||| ||| | |||| |||||||| |||| ||||| ||||| Sbjct 16763 CGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCG 16704 Query 60302 C---CTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTG 60358 | |||||||| | | | | ||| | || ||| |||| ||||| |||||||| Sbjct 16703 CCTGCTCATGGCGCTGGGT-CACAAGAA--GATGTACAACGTGGCCAACCCGTTCGACTG 16647 Query 60359 GATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||| ||||| | | || |||||||||||||| |||||||| ||||| || || Sbjct 16646 GATGGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 16587 >seq1824 Length=71116 Score = 181 bits (200), Expect = 1e-40 Identities = 365/533 (68%), Gaps = 15/533 (3%) Strand=Plus/Minus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || ||||| ||| | | || |||||| ||| ||| ||| | |||||| ||| ||| | Sbjct 42232 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 42173 Query 59655 AAGGATTGGGACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 | |||||| |||||| |||||||| || |||||| || || || Sbjct 42172 CGCCACTGGGACGCCGCGCTCAACCCCGACGAGCGCCACTTCATCGCCCACGTGCTAGCT 42113 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT----GAACTTTTCCAA 59767 |||||||| || || || || ||| | || || | | | | | | | ||| Sbjct 42112 TTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGG-CGTCGCGGTTCATGTCC-- 42056 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 || |||||| | |||||||| || | || |||| | ||| ||| || |||| | Sbjct 42055 -GACGTCCAGGTGGCCGAGGCGCGAGCCTTTTACGGCTTCCAGATCGC-CATCGAGAACA 41998 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 ||||||| |||| ||||||||| || | || | | || || | ||||||| Sbjct 41997 TCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGG 41938 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | |||||||| ||||||||||| |||||| || | || || || ||||||| Sbjct 41937 ACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCA 41878 Query 59947 TGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 ||| ||||| ||| | |||| || || | || ||| | || || || ||||| Sbjct 41877 TGCGCTGGATCGAGGGC-GGAGAGCGCTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTC 41819 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || |||||||| || || || ||||| || || ||||||||||| || || |||||| Sbjct 41818 GAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTC 41759 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||||| | ||||||||||||||| || ||||| |||||||| || || Sbjct 41758 ATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCA 41706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548446443232320