Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2074 102 9e-17 seq1824 102 9e-17 seq3589 100 3e-16 seq1466 91.5 2e-13 seq346 91.5 2e-13 seq146 91.5 2e-13 seq4507 89.7 6e-13 seq236 89.7 6e-13 seq91 89.7 6e-13 seq2489 87.8 2e-12 seq896 86.0 7e-12 >seq2074 Length=58204 Score = 102 bits (112), Expect = 9e-17 Identities = 559/875 (64%), Gaps = 33/875 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | || |||||| ||||||| Sbjct 21524 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCATC 21583 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCT-CCCCAAACTGTGCCATGAG--- 74578 |||||||| || || | ||| || ||| | ||||||| ||||| || Sbjct 21584 CAGTCGAACGGATTGGCGACGTTGTACATCTTCTTGTGCCCCAAA----GCCATTAGCAG 21639 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 ||| || || || || | | |||||| |||| | | | |||||||| |||| Sbjct 21640 GCGGTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGC 21699 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 ||| || || || ||| || ||||| | ||| | ||| || ||| |||| Sbjct 21700 GCAGGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTC 21759 Query 74699 GTGAATGTCTTTGGAAGGG--CA-CTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | | | | ||| | || ||| | | ||| | ||| || | |||| | | Sbjct 21760 GCGGACGCG---GGACTCGTCCAGCTTGACGCGGAGGAGGTCGTAGAGAAGGCACG-CGA 21815 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | | || | || || || || | ||||| |||| Sbjct 21816 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCA 21875 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || || ||||| | ||| |||||||| ||||| || || |||||||||||| | Sbjct 21876 TGAGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGCCCT 21935 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCCAAG 74931 |||| || || || |||||||| || | ||||| | || ||| | || ||||| Sbjct 21936 CGACGCAGGCGAACGCGACAAGACGCTCTGCGAA--GCGC-TCGCCGCCCTCGATCCAGC 21992 Query 74932 TCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991 | | ||| || || || || || || ||||| || || || || ||||||| | Sbjct 21993 GCATGGTCCACTCGGCCTTGCGGCGCACGGCGGGGACCGTCTCTATGGCGCGGAAGAGCC 22052 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 ||||||| || || || | | || | || || |||||| ||||||| | Sbjct 22053 GGTCCTTCTCCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGT 22112 Query 75052 GAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110 | || ||| || ||| |||| | ||||||| | |||||||| || | ||| || Sbjct 22113 GGATGTTCTCAATG-GCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGCGACCTGGACG 22171 Query 75111 TCCTTTGA-AAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAA 75167 || || | | | | || | ||||| | ||||||||||| || |||||||| Sbjct 22172 TC---GGACATGAACCGCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGCGGCGAAG 22228 Query 75168 AAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAATCC 75224 || || || || ||| ||||||||||| || | |||| |||||| | | Sbjct 22229 AAGGCGAGAACGTGGGAGATGAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTCCCAGTGC 22288 Query 75225 TTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTG 75284 || ||| | | | || | ||||||| | |||||||| | | ||||| ||| Sbjct 22289 CGCACGTCGGCGGAGAGGTCCACCTCCTCGGCGGTCCAGAACGAAGCCACGGCCTTCTTG 22348 Query 75285 TACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 || || ||| | | ||||| ||||| || || Sbjct 22349 TAGAACTCCCAGATCTGCGGGTACTTGATCGGGAA 22383 >seq1824 Length=71116 Score = 102 bits (112), Expect = 9e-17 Identities = 270/404 (67%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || || ||||| | ||| |||||||| ||||| || || ||| Sbjct 41748 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAG 41807 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 |||||||| ||||| || || || ||||| || || | ||||| | | || | || Sbjct 41808 AAGATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAGCGCTC-TCCGCCCTC 41866 Query 74925 -ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 ||||| | ||||| || || || || || || ||||| || || || || | Sbjct 41867 GATCCAGCGCATGGCCCACTCGGCCTTGCGGCGCACGGCGGGGACGGTCTCTATGGCGCG 41926 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 ||| |||| ||||||| || || || | | || | || || |||||| | Sbjct 41927 GAACAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACAT 41986 Query 75044 CTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 |||||| || || |||| || ||| |||| | |||| || | |||||||| || | Sbjct 41987 CTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAAAAGGCTCGCGCCTCGGCCA 42045 Query 75103 TCTGTACATCCTTTGA-AAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGAGG 75159 ||| || || || | | | | || | ||||| | || |||||||| |||| Sbjct 42046 CCTGGACGTC---GGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGG 42102 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||| ||||| || || ||| ||||||||||| ||| Sbjct 42103 CGGCGAAGAAAGCTAGCACGTGGGCGATGAAGTGGCGCTCGTCG 42146 >seq3589 Length=27756 Score = 100 bits (110), Expect = 3e-16 Identities = 272/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || || ||||| | ||| |||||||| ||||| || || ||| Sbjct 16929 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAG 16988 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| ||||| || || || ||||| || || | ||||| | || ||| | Sbjct 16989 AAGATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCC 17045 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || || || || Sbjct 17046 TCGATCCAGCGCATGGCCCACTCGGCCTTGCGGCGCACGGCGGGGACGGTCTCTATGGCG 17105 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| |||| ||||||| || || || | | || | || || |||||| Sbjct 17106 CGGAACAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTAC 17165 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | |||| || | |||||||| || Sbjct 17166 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGC 17224 Query 75101 AATCTGTACATCCTTTGA-AAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGA 75157 | ||| || || || | | | | || | ||||| | || |||||||| || Sbjct 17225 CACCTGGACGTC---GGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGA 17281 Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||| ||||| || || ||| ||||||||||| ||| Sbjct 17282 GGCGGCGAAGAAAGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 17327 >seq1466 Length=82550 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 24925 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24866 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 24865 TGAGCTACGAAAGCTAA 24849 >seq346 Length=191772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 156294 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 156235 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 156234 TGAGCTACGAAAGCA 156220 >seq146 Length=277439 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 240160 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 240219 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 240220 TGAGCTACGAAAGCTAA 240236 >seq4507 Length=15869 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 10559 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10500 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 10499 TGAGCTACGAAAGC 10486 >seq236 Length=227225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 161324 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 161265 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 161264 TGAGCTACGAAAGC 161251 >seq91 Length=335306 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 197367 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 197308 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 197307 TGAGCTACGAAAGC 197294 >seq2489 Length=49466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | |||||| ||||||||||||||||||||||||||| ||||| Sbjct 26324 TGCTTTCGTTGAGTCT--ATCTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26267 Query 79684 TGAGCTACGAAAGCAAAAGGGGAACTCTGACCTGGC 79719 |||||||||||||| | || ||| | ||||||| Sbjct 26266 TGAGCTACGAAAGCTACAGTTGAA--ATTACCTGGC 26233 >seq896 Length=117170 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||| ||||||| ||||| Sbjct 73955 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGCGTGCTCTAACCAAC 73896 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 73895 TGAGCTACGAAAGC 73882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547137830194400