Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1785 122 8e-23 seq927 109 5e-19 seq1507 98.7 9e-16 seq5287 93.3 4e-14 seq1689 93.3 4e-14 >seq1785 Length=68507 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || ||||| || || | || Sbjct 64432 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCG 64491 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || ||||| Sbjct 64492 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 64551 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| ||| |||| ||| | ||| || | || |||||| Sbjct 64552 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGCCGCACCCTTGCTGACTACAAC 64611 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| || | | |||||||||| Sbjct 64612 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTGAGGCTCAGGGGTGGCAT 64661 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | || ||||| | || Sbjct 65116 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAGGTGGAGTCTTCG 65175 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || || ||||| || ||||| || || || || Sbjct 65176 GACACCATTGATAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 65235 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | ||| | | || |||||| Sbjct 65236 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 65295 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || ||| | || ||||| | || | || |||||| Sbjct 65296 ATTCAGAAGGAATCCACCCTCCACTTGGTGCTTCGCCTCCGTGGTGGC 65343 >seq927 Length=112269 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || ||||| ||||| | || Sbjct 58224 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 58283 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 58284 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 58343 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || | || || | || || | ||||||||| Sbjct 58344 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 58403 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| | ||| | |||||||||| Sbjct 58404 ATACAGAAGGAGTCTACCCTCCACCTGGTGCTCCGTCTCAGGGGTGGCAT 58453 >seq1507 Length=80756 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| | || Sbjct 30388 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCCTCG 30447 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 30448 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 30507 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | |||| |||||| Sbjct 30508 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAAC 30567 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 30568 ATCCAGAAGGAGTCGACCCTGCACCTGGT 30596 >seq5287 Length=9303 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| | || Sbjct 5183 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCCTCG 5242 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 5243 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5302 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || |||| ||| | || | |||| |||||| Sbjct 5303 CAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAAC 5362 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 5363 ATCCAGAAGGAGTCGACCCTGCACCTGGT 5391 >seq1689 Length=72926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || || || ||||| || Sbjct 2106 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACGCTAGAGGTGGAGAGCTCG 2047 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| ||||| || || || ||||| Sbjct 2046 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 1987 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || | || || | ||| | | ||||||||| Sbjct 1986 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCTTGGCAGATTACAAC 1927 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || || | ||| | || |||| || || ||||||| Sbjct 1926 ATCCAGAAGGAATCCACTCTTCATCTTGTCCTGCGCTTACGCGGTGGCA 1878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || || || ||| | || || | || || || || Sbjct 2562 ATGCAGATATTTGTGAAGACCCTTACAGGAAAGACAATAACATTGGAGGTTGAGAGCTCT 2503 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| ||||| |||||||| ||||| || || || || Sbjct 2502 GACACTATTGACAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATCCCCCCGGACCAG 2443 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || | |||||| | || | | || |||||| Sbjct 2442 CAGAGGCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGCACACTGGCAGACTACAAC 2383 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || | ||| | |||||||||| Sbjct 2382 ATCCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTTAGGGGTGGCAT 2333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| || || ||| ||||||||||||| || || || Sbjct 2335 CATGCAGATCTTTGTGAAGACTCTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTC 2276 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||| || || ||||| || ||||| ||||| || || Sbjct 2275 AGACACAATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 2216 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || ||| | || || | || | | |||||||| Sbjct 2215 GCAGCGACTCATCTTTGCTGGGAAGCAACTCGAGGATGGGCGCACATTGGCTGATTACAA 2156 Query 27167 CATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 2155 TATCCAGAAGGAGTCTAC 2138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434856271906560