Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq9 217 2e-51 seq3095 150 2e-31 seq2645 149 8e-31 seq610 123 3e-23 seq748 118 1e-21 seq1688 104 3e-17 >seq9 Length=772998 Score = 217 bits (240), Expect = 2e-51 Identities = 308/434 (71%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 176239 GATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATC 176298 ||||| || ||||||| || || | || ||| |||| ||||||||||| || ||| Sbjct 516010 GATATTGATGGTATTCATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATC 515951 Query 176299 TCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAA 176358 || || || | | |||| ||| || | || || |||||||| |||| Sbjct 515950 TCTGGTGCCATTTTTCCAA-CTC-----------GATTGCATTTTTACCCAATTCAGGAA 515903 Query 176359 GCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCAC 176418 || ||| | |||| |||||| | |||||||| || || || | || |||| | ||| Sbjct 515902 GCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 515843 Query 176419 TTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGC 176478 ||| | | ||| | | ||| ||||| || | |||||||||| || | | || || Sbjct 515842 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGT 515783 Query 176479 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTC 176538 |||| ||||||||| ||||||| | || || || || || || || | || |||||| Sbjct 515782 ATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTC 515723 Query 176539 CTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGT 176598 | | || || | ||||||||| ||||||||||||||||||| | || || | ||| Sbjct 515722 TTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGT 515663 Query 176599 ACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCAT 176658 || |||||||||||| |||||||| | | |||||||||||| || ||||| ||||| || Sbjct 515662 ACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCAC 515603 Query 176659 ATGCTTGGAGTAGC 176672 ||| | || ||||| Sbjct 515602 ATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 150 bits (166), Expect = 2e-31 Identities = 263/382 (69%), Gaps = 13/382 (3%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 19891 TTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 19950 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCAT-----CTCAGGAGC----AGTCGTCCCA 176316 | || ||| |||| ||||||||||| || || ||| || || | || | || Sbjct 19951 TCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCT 20010 Query 176317 AGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAA 176376 | || || |||||| | ||||| ||||| |||||||| ||| | ||||| || Sbjct 20011 ACTTCTGCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGTTGATGAG 20066 Query 176377 TGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCA 176436 ||| | |||||||| || || || | || |||| | |||||| | | ||| | | Sbjct 20067 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 20126 Query 176437 GCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGT 176496 ||| ||||| || | ||||||||||||| | | || || |||||||||||||| | Sbjct 20127 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 20186 Query 176497 GTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGT 176556 |||||||| || || || || | || || | || |||||| | | | || | ||| Sbjct 20187 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGT 20246 Query 176557 CAAGGATCTTTCTCTGATGGTA 176578 |||||| ||| ||||||| || Sbjct 20247 CAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 149 bits (164), Expect = 8e-31 Identities = 206/287 (72%), Gaps = 1/287 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || |||||||| || || || Sbjct 45700 TTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 45642 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || |||||||| ||||||||||| || ||||| || || | | || | || Sbjct 45641 TCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 45582 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 | |||||| | || || |||||||| |||||||| ||| || |||| |||||| | ||| Sbjct 45581 GTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATAC 45522 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | || ||| | | ||| | | ||| ||| Sbjct 45521 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATG 45462 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGAT 176492 || || | ||||||||||||| | | || || |||||||||||||| Sbjct 45461 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 145 bits (160), Expect = 9e-30 Identities = 205/287 (71%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || |||||||| || || || Sbjct 1125 TTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 1183 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || |||||||| ||||||||||| || |||| || || | | || | || Sbjct 1184 TCTGGTTCTCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCG 1243 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 | |||||| | || || |||||||| |||||||| ||| || |||| |||||| | ||| Sbjct 1244 GTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATAC 1303 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | || ||| | | ||| | | ||| ||| Sbjct 1304 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATG 1363 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGAT 176492 || || | ||||||||||||| | | || || |||||||||||||| Sbjct 1364 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq610 Length=144916 Score = 123 bits (136), Expect = 3e-23 Identities = 200/286 (70%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || ||||| || ||| || | |||||| | | |||||| || Sbjct 69898 ACCTATAACGATTCACTACCCTTATGAAAAATCAATTACATCAGAGCGTTTCCGTGGGCG 69957 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || ||||| || ||||| ||||| || || Sbjct 69958 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAAT-----------GTATGTCCGAT 70006 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || |||||| || || | Sbjct 70007 AGATCTACCCCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAAGAAACAA-TTGTTA 70064 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || | |||| ||||| || || |||||||| || || ||||| || | Sbjct 70065 ATTATAGTATTGATGTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAATATTGTCCGA 70124 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 70125 CAAACTGTTTATCAATGACGGAAGAATATGAACTTTCTACTTATGA 70170 Score = 123 bits (136), Expect = 3e-23 Identities = 200/286 (70%), Gaps = 14/286 (5%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || ||||| || ||| || | |||||| | | |||||| || Sbjct 75701 ACCTATAACGATTCACTACCCTTATGAAAAATCAATTACATCAGAGCGTTTCCGTGGGCG 75642 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || ||||| || ||||| ||||| || || Sbjct 75641 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAAT-----------GTATGTCCGAT 75593 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || |||||| || || | Sbjct 75592 AGATCTACCCCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAAGAAACAA-TTGTTA 75535 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || | |||| ||||| || || |||||||| || || ||||| || | Sbjct 75534 ATTATAGTATTGATGTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAATATTGTCCGA 75475 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 75474 CAAACTGTTTATCAATGACGGAAGAATATGAACTTTCTACTTATGA 75429 >seq748 Length=127770 Score = 118 bits (130), Expect = 1e-21 Identities = 120/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||||||||| ||| ||| |||||||| || | || || || ||||| |||||||||||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCA 176673 |||||||||| ||| |||||||||| || | ||| ||||| || || | || ||||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 176674 GGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCA 176708 ||||| || || || || || ||| || ||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 126568 >seq1688 Length=72660 Score = 104 bits (114), Expect = 3e-17 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 176821 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCAC 176880 ||||| |||||||| | |||||||| |||||| |||||| ||||| | | | ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 176881 TTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACA 176940 ||||| || || | || || | | |||||||| ||||| | ||| || | || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGT 176981 |||||||||||||| || |||||||| |||||||| ||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGT 24714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603408190824960