Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq9 197 2e-45 seq610 147 3e-30 seq1687 140 4e-28 seq4794 127 3e-24 seq1688 123 3e-23 seq1150 122 1e-22 seq2645 120 4e-22 >seq9 Length=772998 Score = 197 bits (218), Expect = 2e-45 Identities = 305/436 (70%), Gaps = 12/436 (3%) Strand=Plus/Minus Query 189789 TAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCACTTCTCTATGGTAACAACATCA 189848 |||| |||||||| || ||||| || ||||| | || ||||| ||||| || | Sbjct 516012 TAGATATTGATGGTATTCATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTA 515953 Query 189849 TTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGTCTACACTTCTACCCAATCTGGG 189908 | |||||||| || | || || | |||| || || |||||||| || Sbjct 515952 TCTCTGGTGCCATTTTTCC-------AACTCGATTG-----CATTTTTACCCAATTCAGG 515905 Query 189909 AAGCAGCAACAGTAGATGAGTGGCTTTACAATGGTGGTCCTTACCAGTTGGTAATCTTCC 189968 |||| ||| | | ||||| ||| | ||||||||||||||||| || | | | | | Sbjct 515904 AAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTAC 515845 Query 189969 ACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAATTATCATACAGACTAG 190028 ||||| | ||||| | | || ||||| | |||||||| | | | | || | Sbjct 515844 ACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGG 515785 Query 190029 GTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTAT 190088 ||||| |||||||| |||||| ||||||| || || || || || ||| || | Sbjct 515784 GTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTT 515725 Query 190089 TCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAG 190148 || | | ||||| ||||||| || ||||||||||||||||||||||| |||| | Sbjct 515724 TCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTG 515665 Query 190149 GTACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCC 190208 |||| |||||||| ||| |||||||| | | ||| || || ||||||||||| ||||| | Sbjct 515664 GTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTC 515605 Query 190209 ATATGGCAGGTGTAGC 190224 | ||| ||||||||| Sbjct 515604 ACATGTTAGGTGTAGC 515589 >seq610 Length=144916 Score = 147 bits (162), Expect = 3e-30 Identities = 215/303 (71%), Gaps = 12/303 (4%) Strand=Plus/Plus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 |||| | || |||| || ||||||||||||| ||| | |||||| | | | ||| | Sbjct 69898 ACCTATAACGATTCACTACCCTTATGAAAAATCAATTACATCAGAGCGTTTCCGTGGGCG 69957 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756 ||||||| ||| |||||||||||||||||||||||| |||| ||||| || Sbjct 69958 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAA-----TGTA------TGTCCGAT 70006 Query 188757 TAATTTACCTGTAGTTGATTGGGTAATGAATAAACAAACTAAGAAGAAGGAACTTAGAAA 188816 || |||| | || |||||| | | | || | | ||| ||||| || || || Sbjct 70007 AGATCTACCCCTTGTGGATTGGAGATTTGAAAAGGATATTAAAAAGAAACAA-TTGTTAA 70065 Query 188817 TTATTCAATTGACTTTGGTGCTTGCATTTTCTGTGGGAATTGTGTAGAATACTGTCCAAC 188876 |||| ||||| | || | ||| || || ||||| || ||||| ||||| ||||| || Sbjct 70066 TTATAGTATTGATGTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAATATTGTCCGAC 70125 Query 188877 TAACTGTCTATCCATGACAGAAGAGTATGAACTATCTGTTTTTGACAGACATCAACTCAA 188936 |||||| |||| ||||| ||||| |||||||| ||| || ||| | ||| || | || Sbjct 70126 AAACTGTTTATCAATGACGGAAGAATATGAACTTTCTACTTATGATCGTCATGAATTGAA 70185 Query 188937 CTA 188939 || Sbjct 70186 TTA 70188 Score = 147 bits (162), Expect = 3e-30 Identities = 215/303 (71%), Gaps = 12/303 (4%) Strand=Plus/Minus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 |||| | || |||| || ||||||||||||| ||| | |||||| | | | ||| | Sbjct 75701 ACCTATAACGATTCACTACCCTTATGAAAAATCAATTACATCAGAGCGTTTCCGTGGGCG 75642 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756 ||||||| ||| |||||||||||||||||||||||| |||| ||||| || Sbjct 75641 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAA-----TGTA------TGTCCGAT 75593 Query 188757 TAATTTACCTGTAGTTGATTGGGTAATGAATAAACAAACTAAGAAGAAGGAACTTAGAAA 188816 || |||| | || |||||| | | | || | | ||| ||||| || || || Sbjct 75592 AGATCTACCCCTTGTGGATTGGAGATTTGAAAAGGATATTAAAAAGAAACAA-TTGTTAA 75534 Query 188817 TTATTCAATTGACTTTGGTGCTTGCATTTTCTGTGGGAATTGTGTAGAATACTGTCCAAC 188876 |||| ||||| | || | ||| || || ||||| || ||||| ||||| ||||| || Sbjct 75533 TTATAGTATTGATGTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAATATTGTCCGAC 75474 Query 188877 TAACTGTCTATCCATGACAGAAGAGTATGAACTATCTGTTTTTGACAGACATCAACTCAA 188936 |||||| |||| ||||| ||||| |||||||| ||| || ||| | ||| || | || Sbjct 75473 AAACTGTTTATCAATGACGGAAGAATATGAACTTTCTACTTATGATCGTCATGAATTGAA 75414 Query 188937 CTA 188939 || Sbjct 75413 TTA 75411 >seq1687 Length=73397 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 186818 ACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGCCTGTAATCACA 186877 || ||| | ||||| ||||| |||||||| || ||| || | | | | |||| Sbjct 194 ACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAAT 135 Query 186878 GGGTACACACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGT 186937 || || | || ||||| ||||||| | | || |||||||| ||||||||||| ||||| Sbjct 134 GGATATAATCCTTTTGGAATGAATAGTTTATCAGTATGGGCTTGGATGTTCTTATTTGGA 75 Query 186938 CATTTAGTTTGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAG 186997 ||| | |||||||| || |||||||||||| | ||||| ||| | || |||||||| || Sbjct 74 CATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGTGGATATTGGCAGGAA 15 Query 186998 TTAATTGAGACT 187009 |||||||||||| Sbjct 14 TTAATTGAGACT 3 >seq4794 Length=13131 Score = 127 bits (140), Expect = 3e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 186971 ATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAAAGA 187030 ||||| ||| | || |||||||| || |||||||||||| | || ||||| ||| || | Sbjct 1 ATTTCCTGGCGTGGATATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGC 60 Query 187031 ACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCACTTTCTATTGTTCAA 187090 || || | || ||| || | ||||||||||| || ||||| ||||| ||||| ||| Sbjct 61 ACACCTTTGGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAA 120 Query 187091 GCAAGACTAGTTGGTTTATCACATTTTGCCATAGGATTTGTGCTTACCTATGCACCATTC 187150 |||||| ||||||| ||| | || ||| || | || | | | | || |||||| | ||| Sbjct 121 GCAAGATTAGTTGGATTAGCCCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTC 180 Query 187151 CTGATAGCAACAACAGCA 187168 |||| || ||||| || Sbjct 181 TTGATTGCCTCAACATCA 198 >seq1688 Length=72660 Score = 123 bits (136), Expect = 3e-23 Identities = 135/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 190371 ATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTAC 190430 ||||||| |||||| || | |||||||| |||||| ||||||||||| | ||||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 190431 ACTTCTTCTTAGCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAATGGGTATTTGCA 190490 ||||||| || | | ||||||| | | ||||| || | | |||||| | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 190491 CAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCACAAGGT 190549 | |||||||||||| ||||||||||||| || ||||| |||||||||||| |||||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGT 24698 >seq1150 Length=101756 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 186977 TGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAAAGAACTCCA 187036 ||| | || |||||||| || |||||||||||| | || ||||| ||| || | || || Sbjct 87184 TGGCGTGGATATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCT 87125 Query 187037 ATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCACTTTCTATTGTTCAAGCAAGA 187096 | || ||| || | ||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 87124 TTGGCTAATTTAATTCGCTGGAGAGATAAGCCCGTGGCTCTTTCCATTGTGCAAGCAAGA 87065 Query 187097 CTAGTTGGTTTATCACATTTTGCCATAGGATTTGTGCTTACCTATGCACCATTCCTGATA 187156 ||||||| ||| | || ||| || | || | | | | || |||||| | ||| |||| Sbjct 87064 TTAGTTGGATTAGCCCACTTTTCCGTGGGTTATATATTCACTTATGCAGCTTTCTTGATT 87005 Query 187157 GCAACAACAGCA 187168 || ||||| || Sbjct 87004 GCCTCAACATCA 86993 >seq2645 Length=47068 Score = 120 bits (132), Expect = 4e-22 Identities = 194/278 (70%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 189767 GCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCA 189826 || || || ||||| || || ||||| |||||||| || | ||||| ||| | ||||| Sbjct 45691 GCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCT 45633 Query 189827 CTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGT 189886 || || ||||| ||||| || || |||||||| || | ||| | || | || || Sbjct 45632 CTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGA 45573 Query 189887 CTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGGCTTTACAATGGTGGT 189946 | || || |||||||| |||||||| ||| || | ||||| ||| | |||||||||||| Sbjct 45572 TTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGT 45513 Query 189947 CCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAG 190006 ||||| || | | | | || ||| | ||||| | | || ||||| | || Sbjct 45512 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 45453 Query 190007 TGGGAATTATCATACAGACTAGGTATGAGACCTTGGAT 190044 |||||| | | | | || |||||| | |||||||| Sbjct 45452 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 114 bits (126), Expect = 2e-20 Identities = 193/278 (69%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 189767 GCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCA 189826 || || || ||||| || || ||||| |||||||| || | ||||| ||| | ||||| Sbjct 1134 GCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCT 1192 Query 189827 CTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGT 189886 || || ||||| ||||| || | |||||||| || | ||| | || | || || Sbjct 1193 CTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGA 1252 Query 189887 CTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGGCTTTACAATGGTGGT 189946 | || || |||||||| |||||||| ||| || | ||||| ||| | |||||||||||| Sbjct 1253 TTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGT 1312 Query 189947 CCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAG 190006 ||||| || | | | | || ||| | ||||| | | || ||||| | || Sbjct 1313 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1372 Query 190007 TGGGAATTATCATACAGACTAGGTATGAGACCTTGGAT 190044 |||||| | | | | || |||||| | |||||||| Sbjct 1373 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631337000624480