Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq84 109 5e-19 seq2976 104 2e-17 seq951 102 7e-17 seq1507 96.9 3e-15 seq238 95.1 1e-14 seq1785 91.5 1e-13 seq927 89.7 4e-13 seq5287 87.8 2e-12 >seq84 Length=349560 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| || || ||| ||| || || || || || || Sbjct 21303 CATGCCTCCCCTGAGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 21244 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| || || |||| || ||||| ||||| || || ||||||||||||||||| | Sbjct 21243 GGCAAGGGTGCGCCCGTCCTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGG 21184 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| ||| | | | ||||| |||| Sbjct 21183 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCAGAAGACT 21125 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| ||||| | || || || || || || || ||||| ||||| Sbjct 21124 CCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 21073 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | ||| | ||||| || || ||| ||| || || || || || || Sbjct 21075 CATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 21016 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || | || || ||||| ||||| || || ||||||||||||||||| | Sbjct 21015 AGCAAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGG 20956 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| ||| | | | || || |||| Sbjct 20955 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACT 20897 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || | ||||| | || || || || || || || ||||| ||||||| Sbjct 20896 CCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCT 20843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||| | || |||||| || | ||| | ||||| || || ||| ||| || Sbjct 21544 TAACGAAAATCTG--CATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTT 21487 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || || || || || ||||| || || |||| || ||||| ||||| || || || | Sbjct 21486 CTGGATGTTGTAGTCAGCAAGGGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAA 21427 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||||||||| | ||| | | ||| |||||| ||| || |||| | | | Sbjct 21426 CCTCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGAT 21367 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 || || |||||||| |||| ||||| | || || || || || ||||||||||| Sbjct 21366 GGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGAT 21307 Query 39279 TTGCAT 39284 ||||| Sbjct 21306 CTGCAT 21301 >seq2976 Length=39079 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| || |||||| ||| || || || || || ||||| Sbjct 26513 CCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 26454 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || || || || || ||||||||||| | || Sbjct 26453 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 26394 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| || || | ||| | | | || || |||||||| Sbjct 26393 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 26335 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| |||||| | || |||||||| || || || ||||| |||||||| || Sbjct 26334 CTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGAC 26281 >seq951 Length=113133 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || ||||| || || || | Sbjct 26792 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCC 26733 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 26732 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 26673 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 26672 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 26614 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 26613 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 26574 >seq1507 Length=80756 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 30603 GCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 30544 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 30543 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTT 30484 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 30483 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 30425 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 30424 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 30385 >seq238 Length=227787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || || || || || | Sbjct 50036 GCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGACC 50095 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 || |||||||| ||||| || || || ||||||||||||| ||||||| | || ||| | Sbjct 50096 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCCTCCT 50154 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||||| ||| ||| || | ||| | | | || || |||||||| |||| ||| Sbjct 50155 TGTCCTGGATCTTCGCCTTCA-CGTTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTG 50213 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || || || || |||||||| ||||| Sbjct 50214 ATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 50251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || || || || || | Sbjct 51304 GCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGACC 51363 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 || |||||||| ||||| ||||| || ||||||||||||| ||||||| | || ||| | Sbjct 51364 ATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCCTCCT 51422 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||||| ||| ||| || | ||| | | | || || ||||| || |||| ||| Sbjct 51423 TGTCCTGGATCTTCGCCTTCA-CGTTGTCAATGGTGTCAGATGACTCAACCTCCAAAGTG 51481 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || || || || ||||| || ||||| Sbjct 51482 ATGGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 51519 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || || || || || | Sbjct 50264 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCC 50323 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || |||||||||||||| | || | || ||| || Sbjct 50324 ATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 50383 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | ||| || ||||| || |||| |||| Sbjct 50384 GTCCTGGATCTT-TGCCTTCACGTTGTCAATCGTGTCAGATGACTCAACCTCCAAAGTGA 50442 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || ||||| || ||||| Sbjct 50443 TGGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 50479 >seq1785 Length=68507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || ||||| ||||| | || ||||| || Sbjct 64862 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCGGCCATCCTCAAGTTGC 64803 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || ||||||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 64802 TTGCCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 64743 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | || || |||||||| || | |||||| | || || || Sbjct 64742 GCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTGATGGTCTTGCCAGT 64684 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 64683 GAGGGTCTTCACGAAGATCTGCAT 64660 >seq927 Length=112269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || || ||||| || || || |||| || Sbjct 57977 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 57918 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | ||| | || ||| |||||| Sbjct 57917 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGTATGCCCTCCTTGTCCTG 57858 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || ||||| || || | ||||| | | Sbjct 57857 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTGATGGTCT 57799 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||| ||||| Sbjct 57798 TGCCAGTGAGGGTCTTGACAAAGATCTGCAT 57768 >seq5287 Length=9303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 5398 GCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 5339 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | || | || ||| || Sbjct 5338 GTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTT 5279 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 5278 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 5220 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| ||||| || Sbjct 5219 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 5180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429485773425764