Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5287 104 2e-17 seq238 95.1 8e-15 seq1689 89.7 3e-13 seq84 89.7 3e-13 >seq5287 Length=9303 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| ||||| || |||||||| || || || || ||| Sbjct 5180 AAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCC 5239 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| || || | ||||| || Sbjct 5240 TCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 5299 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| || || ||||| |||| ||||| | | ||| ||| Sbjct 5300 CAGCAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTAC 5359 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 5360 AACATCCAGAAGGAGTCGAC 5379 >seq238 Length=227787 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || || || |||||| | || ||||| || | Sbjct 50479 ATGCAGATTTTTGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCT 50420 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| || ||||| || || | ||||| || || Sbjct 50419 GACACGATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 50360 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || ||||| || | || || | | || |||||| Sbjct 50359 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCTGACTACAAC 50300 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 50299 ATCCAGAAGGAGTCCAC 50283 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || |||||| | || ||||| || | Sbjct 51519 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCT 51460 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 51459 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 51400 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || || || || | ||||| | | || |||||| Sbjct 51399 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTCGCAGACTACAAC 51340 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 51339 ATCCAGAAGGAGTCCAC 51323 >seq1689 Length=72926 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||||||||| ||||| | || Sbjct 3018 ATGCAGATATTCGTCAAGACACTGACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCG 2959 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | ||| |||| | || ||| || || || ||| |||| || || || Sbjct 2958 GACACGATCAACAATGTTAAGGC-CAAGATTCAGGATAAGGAGGGTATACCCCCGGACCA 2900 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | || || || | |||||||| Sbjct 2899 GCAGAGGCTCATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGTACATTGGCTGATTACAA 2840 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2839 CATCCAGAAGGAGTCGAC 2822 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||| || || || || | || Sbjct 2106 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACGCTAGAGGTGGAGAGCTCG 2047 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || |||||||| Sbjct 2046 GACACCATTGATAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGAATTCCTCCAGATCA 1988 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | || || || | |||||||| Sbjct 1987 GCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCTTGGCAGATTACAA 1928 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 1927 CATCCAGAAGGAATCCAC 1910 >seq84 Length=349560 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| |||||||| || || || ||||| || || || || || | Sbjct 21529 ATGCAGATTTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCTTCT 21588 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| |||||| | || || || || Sbjct 21589 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCAG 21648 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || || || |||| ||||| | | || |||||| Sbjct 21649 CAGAGGCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGGCGCACCCTTGCTGACTACAAC 21708 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 21709 ATCCAGAAGGAGTCCAC 21725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337962522445424