Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1871 111 2e-19 seq209 102 1e-16 >seq1871 Length=66875 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | ||||| |||| ||| ||| Sbjct 39527 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCG 39586 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| ||||||||| ||| | || |||||||| || || Sbjct 39587 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 39646 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| ||||| Sbjct 39647 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 39706 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || || |||||||| Sbjct 39707 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 39747 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || || ||||| |||||||| | ||| | |||| Sbjct 39849 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 39908 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC--CCATTGATGAATTCCTACCGCTACACGCATC 78515 |||||||| || || ||||| ||||| |||| ||| || || || | || | ||| Sbjct 39909 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 39966 Query 78516 AACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 78575 ||||| ||||| ||||||||||| |||| | | || || | ||| || | || Sbjct 39967 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 40026 Query 78576 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | |||||| || ||||| |||| || |||||| || ||||||||||| Sbjct 40027 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 40076 >seq209 Length=235896 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | ||||| |||| ||| || Sbjct 50839 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 50898 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| ||||||||| ||| | || |||||||| | || Sbjct 50899 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAGCTGAA 50958 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| ||||| Sbjct 50959 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 51018 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || || |||||||| Sbjct 51019 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 51059 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || || ||||| |||||||| | ||| | |||| Sbjct 51161 AGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 51220 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| || || ||||| ||||| | ||| || || || || | || | ||| | Sbjct 51221 GTATGTTTTGATGGCAGATTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 51279 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| || || |||||||| || ||| | | ||||| | ||| || | |||| Sbjct 51280 ACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 51339 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || || ||||| |||| || ||||| || ||||||||||| Sbjct 51340 GAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCCTATCGTAAATAAT 51388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694569566561920