Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq9 228 1e-54 seq3095 212 8e-50 seq2645 192 7e-44 seq1688 159 4e-34 seq748 129 7e-25 seq1305 93.3 5e-14 seq168 84.2 3e-11 >seq9 Length=772998 Score = 228 bits (252), Expect = 1e-54 Identities = 328/462 (71%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 183298 GCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCG 183357 |||||| |||| ||| ||| | || || || || || | || || || ||| || Sbjct 516032 GCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATTTTTGGTTCT 515975 Query 183358 CTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGA 183417 | | ||||||||||| || ||||||||||| | || ||||||| | |||| Sbjct 515974 TTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAACTCGATTG-- 515924 Query 183418 CTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGT 183477 || || || || || |||||| ||||| || ||||| ||| | || || |||||| Sbjct 515923 ---CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 515867 Query 183478 CCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAG 183537 ||||| | || | || | |||||| | |||| || || || |||||||||||| Sbjct 515866 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 515807 Query 183538 TGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCT 183597 |||||| | || | |||| ||||||| ||||||||| |||||| || || ||| Sbjct 515806 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCT 515747 Query 183598 GTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGAT 183657 ||| | ||||| || ||||| ||| || | || ||| | |||||||| ||| |||| Sbjct 515746 GTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGAT 515687 Query 183658 GGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCAC 183717 |||||||| | || ||| ||| || || |||| |||| |||| ||| | | ||||||| Sbjct 515686 GGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 515627 Query 183718 AACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGT 183759 |||||||| ||||| || || |||||| | ||||| ||| || Sbjct 515626 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq3095 Length=35243 Score = 212 bits (234), Expect = 8e-50 Identities = 335/477 (70%), Gaps = 15/477 (3%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || ||||| | ||||| || || | || ||||| || | Sbjct 19797 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 19856 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || | || ||| ||||||| | Sbjct 19857 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || | | |||||||||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 183374 ACATCAT-----CTCTGGTGCAGTTGTTCCTTCTTCCAAC----GCAATTGGACTTCACT 183424 | || || ||||||||| || ||||| | | | | || || ||| | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 183425 TCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACC 183484 | || || |||||||| ||||| | ||||||||| | || || || |||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 183485 AACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAAT 183544 | || | || | |||||| | |||| || || || |||||||||||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 183545 TGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTG 183604 | || |||||| ||||||||||||||||| |||||| ||| || |||||||| | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 183605 CTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTA 183661 |||| || ||||| ||| || | | ||| | |||||||| |||| ||||| || Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 192 bits (212), Expect = 7e-44 Identities = 274/382 (72%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || ||||| | || || || || | || |||||||| | Sbjct 45794 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 45735 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | |||| |||| || || | |||||| |||| || | Sbjct 45734 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 45677 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || || | |||||||||| Sbjct 45676 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 45617 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || ||||||||||| || ||||| |||| | || ||| | || || || || | Sbjct 45616 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 45557 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| |||||| | ||||| ||| | || || ||||||||||| | || | | Sbjct 45556 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 45497 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | || ||| | |||| || || || |||||||||||||||||| | || || Sbjct 45496 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 45437 Query 183554 GTCTCGGTATGCGTCCTTGGAT 183575 |||| ||||||||||||||||| Sbjct 45436 GTCTGGGTATGCGTCCTTGGAT 45415 Score = 187 bits (206), Expect = 3e-42 Identities = 273/382 (71%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || ||||| | || || || || | || |||||||| | Sbjct 1031 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 1090 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | |||| |||| || || | |||||| |||| || | Sbjct 1091 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 1148 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || || | |||||||||| Sbjct 1149 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 1208 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || |||||||||| || ||||| |||| | || ||| | || || || || | Sbjct 1209 ATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 1268 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| |||||| | ||||| ||| | || || ||||||||||| | || | | Sbjct 1269 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 1328 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | || ||| | |||| || || || |||||||||||||||||| | || || Sbjct 1329 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1388 Query 183554 GTCTCGGTATGCGTCCTTGGAT 183575 |||| ||||||||||||||||| Sbjct 1389 GTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 159 bits (176), Expect = 4e-34 Identities = 157/202 (78%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 183902 ATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTC 183961 |||| || |||||||| | |||||||| |||||| || ||||| ||||||||| | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 183962 ACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCA 184021 ||||||| ||||||||||| || | || |||||||| |||||| | ||| |||| | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 184022 CTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTC 184081 |||||||||| ||||| |||||||| || |||||||| || | ||||| | ||||||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 184082 GTGTCCTGAACACCTGGGCAGA 184103 | | |||| || ||||| || Sbjct 24696 GCCTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 129 bits (142), Expect = 7e-25 Identities = 155/207 (75%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 183637 GGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATG 183696 |||||||| |||| | |||||||| | | || ||| ||| || || |||| |||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 183697 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT 183756 |||| ||||| ||| ||||||||||||| | ||| || || ||||| | ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 183757 GGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTG 183816 ||||| ||||| ||||| || |||||||| ||||| |||| |||| || | || | | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCT-CTAGTTT 126544 Query 183817 GTTC-GTGAAACCACTGAGTCTGAGTC 183842 | || | || |||||||| |||| || Sbjct 126543 GCTCAGGGAGACCACTGAAACTGAATC 126517 >seq1305 Length=91268 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/201 (71%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 170999 ATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGG 171058 ||| || |||||||||||||| || || | || ||| || || || |||||||| Sbjct 28286 ATACATCCTTGATGCTGCTGAGGATAATGGCGTGGAGTTGCCATACTCATGCCGTGCTGG 28345 Query 171059 TGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATC 171118 |||||||| || |||||||| ||||||||| ||| || ||||| || ||| ||| Sbjct 28346 GGCTTGTTCCACATGTGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCAGATGGATC 28405 Query 171119 TTTCCTTGATGATG---ATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCC 171175 || |||||||||| | ||| ||| ||| | | ||||| || || ||||| || Sbjct 28406 CTTTCTTGATGATGGGCAGCAGGCTGA---AGGCTATGTGCTGACTTGTGTGTCATACCC 28462 Query 171176 TACAAGT--GATTGTGTAATC 171194 | |||| || ||||| ||| Sbjct 28463 T--AAGTCGGACTGTGTCATC 28481 >seq168 Length=262312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 10/199 (5%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || |||||||||||||| || || | || ||| || || || |||||||| Sbjct 15073 TACATCCTTGATGCTGCTGAGGATAATGGTGTGGAGTTGCCATACTCATGCCGTGCTGGG 15132 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 ||||| || ||||| ||||| ||||||||| ||| || ||||| ||||| ||| Sbjct 15133 GCTTGCTCCACCTGCGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCCGACGGATCC 15192 Query 171120 TTCCTTGATGATG---ATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCT 171176 ||||| ||||||| | ||| ||| ||| | | ||||| || ||||| || || Sbjct 15193 TTCCTGGATGATGGGCAGCAGGCTGA---AGGCTATGTGCTGACATGTGTCTCGTACCC- 15248 Query 171177 ACAAGT--GATTGTGTAAT 171193 ||||| || ||||| || Sbjct 15249 -CAAGTCCGACTGTGTCAT 15266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621981537243360