Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3095 246 3e-60 seq9 242 4e-59 seq2645 230 3e-55 seq1688 134 2e-26 seq748 129 7e-25 >seq3095 Length=35243 Score = 246 bits (272), Expect = 3e-60 Identities = 343/475 (72%), Gaps = 17/475 (4%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||||| ||||| || ||| | || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || ||| | ||| || || ||||| ||||||| ||| | Sbjct 19858 ATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || || || || ||||||| | | |||||||||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 164106 ACATCAT-----CTCTGGTGCTGTTATCCCTTC----TTCTAACGCTATCGGTCTGCACT 164156 | || || ||||||||| |||| ||| | |||| || ||||| |||||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 | ||||| |||||||| ||| | | || || ||| | ||||| || ||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 164276 | || |||| | |||||| | |||| | | ||| ||||||||||||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 164277 TTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTG 164336 || || |||||| |||||||||||||||||| || ||||| || |||||||| || | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 164337 CAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGC 164391 | || | ||| || ||| || | | ||| | |||||||| ||| |||||||| Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 Score = 104 bits (114), Expect = 3e-17 Identities = 117/155 (75%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| | ||| ||||||||||||||| | || ||||| || || | || ||| Sbjct 21334 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 21275 Query 165225 CCCACTGCTTATCTTGCTCTTGGG----GGTTGGCTTACTGGGACTACTTTCGTCACGAG 165280 || ||||||| | ||| | ||| |||||| |||| ||||||||||| || || Sbjct 21274 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTACTTTTGTAACTTC 21215 Query 165281 TTGGTATACTCACGGACTTGCGAGTTCCT-ATCTT 165314 ||||||||| || ||| | || ||||||| ||||| Sbjct 21214 TTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 21180 >seq9 Length=772998 Score = 242 bits (268), Expect = 4e-59 Identities = 334/467 (72%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || ||||||||||||| ||| ||| | || || ||||| || | || || | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 |||||| | | ||||||||||| || ||||||||||| | || ||| ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAAC 515931 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200 | || |||| || ||||| || |||||| ||| ||| || |||||| | ||| Sbjct 515930 TCGAT-----TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATG 164260 || |||||||||| | || |||| | |||||| | |||| | | ||| ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 164261 GGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATAC 164320 |||||||||||||||||| || | |||| ||||||| |||||||||| || ||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 164321 TCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 164380 || |||||||| | || || | ||| || ||| || | || ||| | |||||||| | Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 164381 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAG 164440 |||||||||| |||||| | || |||| ||| || ||||||| ||| | || ||| || Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 164441 GCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGC 164487 | |||||||||||||| ||||| || || || ||| | || ||||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq2645 Length=47068 Score = 230 bits (254), Expect = 3e-55 Identities = 290/392 (74%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 |||| || ||||| |||||| ||||| ||||| |||||| | || |||| ||||| Sbjct 45802 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 45743 Query 163979 GGCGTCCTGATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCA 164036 || || ||||||| |||| ||| | | | | ||| | ||| || || |||||||||| Sbjct 45742 GGGGTTTTGATGAT-CCCTACCTTATTGACCACAACTTC-TGTATTTATTATCGCCTTCA 45685 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 ||| || ||||| || || || ||||| || || || || || ||||||| || | | Sbjct 45684 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 45626 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 |||||||||| || ||||||||||| |||| ||| ||||| | ||||| |||| | Sbjct 45625 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 45566 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 | ||||| || |||||||| ||| | || |||||| | ||||| |||||||||| Sbjct 45565 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 45506 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 164276 | || |||| | || ||| | |||| | | ||| ||||||||||||||||||| Sbjct 45505 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 45446 Query 164277 TTTCTTACCGTCTTGGTATGCGTCCTTGGATT 164308 || || |||||| |||||||||||||||||| Sbjct 45445 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 45414 Score = 224 bits (248), Expect = 1e-53 Identities = 289/392 (74%), Gaps = 5/392 (1%) Strand=Plus/Plus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 |||| || ||||| |||||| ||||| ||||| |||||| | || |||| ||||| Sbjct 1023 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 1082 Query 163979 GGCGTCCTGATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCA 164036 || || ||||||| |||| ||| | | | | ||| | ||| || || |||||||||| Sbjct 1083 GGGGTTTTGATGAT-CCCTACCTTATTGACCACAACTTC-TGTATTTATTATCGCCTTCA 1140 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 ||| || ||||| || || || ||||| || || || || || ||||||| || | | Sbjct 1141 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 1199 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 |||||||||| || |||||||||| |||| ||| ||||| | ||||| |||| | Sbjct 1200 ATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 1259 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 | ||||| || |||||||| ||| | || |||||| | ||||| |||||||||| Sbjct 1260 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 1319 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 164276 | || |||| | || ||| | |||| | | ||| ||||||||||||||||||| Sbjct 1320 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 1379 Query 164277 TTTCTTACCGTCTTGGTATGCGTCCTTGGATT 164308 || || |||||| |||||||||||||||||| Sbjct 1380 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 1411 >seq1688 Length=72660 Score = 134 bits (148), Expect = 2e-26 Identities = 150/200 (75%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 164636 GGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCAC 164695 ||||| |||||||| | || |||||||| ||| ||||||||||| ||||| | ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 164696 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACC 164755 ||||| || || |||||||| | || |||||||| |||||| | || |||| || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 164756 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164815 |||||||||||||| || |||||||| |||||||| || | | ||| | || ||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 24695 Query 164816 GTGCTCAACACCTGGGCAGA 164835 | | || || ||||| || Sbjct 24694 CTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 129 bits (142), Expect = 7e-25 Identities = 153/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 164369 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATG 164428 |||||||| ||| ||| ||| ||| || | || |||||||| || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 164429 TTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCA 164488 | || |||||||| ||||||||||||| | ||| || || || || | || ||||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 164489 GGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTG 164548 ||||| || |||||||| || |||||||| ||||| |||| |||| || ||| || Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 164549 GTTCGTGAGACCACCGAAAATGAGTC 164574 | | |||||||| |||| ||| || Sbjct 126542 CTCAGGGAGACCACTGAAACTGAATC 126517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557574739068960