Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3095 232 8e-56 seq9 214 2e-50 seq2645 192 7e-44 seq1688 140 4e-28 seq748 114 2e-20 >seq3095 Length=35243 Score = 232 bits (256), Expect = 8e-56 Identities = 339/476 (71%), Gaps = 15/476 (3%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| |||| | || ||||| || |||| ||||||||||| || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || |||||||| ||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 177777 CATCATTT-----CTGGTGCTGTTGTTCCTTC----TTCTAACGCTATTGGTCTCCACTT 177827 || || | ||||||| || ||||| | |||| || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 || || |||||||| || ||| | ||||||||| | |||||||| ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 || || | | |||||| | | ||| | | || |||||||||||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGC 178007 | || ||| || ||||||||||| ||||| ||| ||||| || ||||| || || || Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 178008 AGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTA 178063 || ||||||| ||| | || | ||| | |||||||| ||| ||||| |||| Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq9 Length=772998 Score = 214 bits (236), Expect = 2e-50 Identities = 326/464 (70%), Gaps = 14/464 (3%) Strand=Plus/Minus Query 177698 TCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 177757 |||| ||| |||| ||| ||| | || || || || || | ||| || | ||||| Sbjct 516034 TCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 177758 CCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTG 177817 | | | ||||| ||||| || || |||||||| || |||| ||| | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 515924 Query 177818 GTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTG 177877 || || || || || |||||| || ||||| ||||| ||| | |||||||||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 177878 GTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTG 177937 |||||| | || || | | |||||| | | ||| | | || |||||||||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 177938 AGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTC 177997 ||||||||||| || | | || ||||||| ||| ||||| ||| ||| | || |||| Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 515749 Query 177998 CAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTG 178057 | || | || || ||||||| ||| | |||| ||| | |||||||| |||||||| Sbjct 515748 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 515689 Query 178058 ACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGC 178117 | | |||||| | || ||| ||| || ||||||| ||| |||| ||| | | ||||| Sbjct 515688 ATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 515629 Query 178118 ACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGT 178161 |||||||||| ||||| || || |||||||| || || ||| || Sbjct 515628 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq2645 Length=47068 Score = 192 bits (212), Expect = 7e-44 Identities = 279/390 (72%), Gaps = 3/390 (1%) Strand=Plus/Minus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || ||||| |||||| |||| |||| | |||||||| || |||| ||||| Sbjct 45802 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 45743 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 || || ||||||||||||| | | | | || ||||| || || |||| ||| | Sbjct 45742 GGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCAT 45684 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 ||| || ||||| || || || || || || ||||| || || ||||||| || | || Sbjct 45683 CGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTA 45625 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 ||| ||||| || || |||||||| || ||||| ||||| | || || | || || Sbjct 45624 TGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTT 45565 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 || || || |||||||| || || | ||||| ||| | |||||||||||||||| | Sbjct 45564 TTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGA 45505 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 || || | | || ||| | | ||| | | || |||||||||||||||||||| Sbjct 45504 GCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 45445 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGAT 177977 | || ||| || ||||||||||| ||||| Sbjct 45444 TAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 188 bits (208), Expect = 9e-43 Identities = 278/390 (71%), Gaps = 3/390 (1%) Strand=Plus/Plus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || ||||| |||||| |||| |||| | |||||||| || |||| ||||| Sbjct 1023 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 1082 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 || || ||||||||||||| | | | | || ||||| || || |||| ||| | Sbjct 1083 GGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCAT 1141 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 ||| || ||||| || || || || || || ||||| || || ||||||| || | || Sbjct 1142 CGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTA 1200 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 ||| ||||| || | |||||||| || ||||| ||||| | || || | || || Sbjct 1201 TGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTT 1260 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 || || || |||||||| || || | ||||| ||| | |||||||||||||||| | Sbjct 1261 TTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGA 1320 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 || || | | || ||| | | ||| | | || |||||||||||||||||||| Sbjct 1321 GCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1380 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGAT 177977 | || ||| || ||||||||||| ||||| Sbjct 1381 TAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 140 bits (154), Expect = 4e-28 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 178304 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGC 178363 ||||||| || ||||| | ||||||||||| || ||||||||||| ||||| | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 178364 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCA 178423 ||||||| || || |||||||| | || ||||||||||||||| | ||| |||| | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 178424 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGG 178481 | |||||||||||||| || |||||||| |||||||| || | | ||||| || || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGG 24699 >seq748 Length=127770 Score = 114 bits (126), Expect = 2e-20 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 178039 GGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATG 178098 |||||||| ||| ||| | | |||| | | || ||| ||| || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 178099 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCT 178158 |||| ||||| ||| ||||||||||||| | ||| || || ||||| || || || ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 178159 GGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTC 178211 ||||| || || ||||| || |||||||| ||||| |||| |||| || || Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTC 126550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596222017516480