Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq3095 215 6e-51 seq9 210 3e-49 seq2645 185 1e-41 seq1688 120 4e-22 seq748 82.4 9e-11 >seq3095 Length=35243 Score = 215 bits (238), Expect = 6e-51 Identities = 334/475 (70%), Gaps = 13/475 (3%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| |||| ||| || |||||||| || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| || || || ||||| ||||||| ||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCT 19917 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| |||||||| | | ||||| ||||| Sbjct 19918 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 19977 Query 169532 ATCAT-----CTCTGGTGCTGTTGTGCC---CT-CTTCCAACGCAATCGGTCTTCACTTC 169582 || || ||||||||| || | || || |||| || ||||| | ||||| Sbjct 19978 ATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTT 20037 Query 169583 TATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAA 169642 || || |||||||| ||| | | ||||| ||||| ||||| || ||||||| | Sbjct 20038 TACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAG 20093 Query 169643 CTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTG 169702 || |||| | |||||| | | || | | ||| |||||||||||||||||| | Sbjct 20094 CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 20153 Query 169703 TCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCA 169762 | |||||||||||||| |||||||| |||||| || || ||||| ||||| || Sbjct 20154 AGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCT 20213 Query 169763 GCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTA 169817 || | ||||||||| || | |||| |||| ||||| || ||||| |||| Sbjct 20214 GCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq9 Length=772998 Score = 210 bits (232), Expect = 3e-49 Identities = 329/468 (70%), Gaps = 16/468 (3%) Strand=Plus/Minus Query 169445 TTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTT 169504 || || ||||||||||||| ||| || | || || || || || | || || || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATT 515984 Query 169505 GCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAAC 169564 ||||||| | | ||||| ||||| || ||||||||||| || | |||||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTT-------TCCAAC 515931 Query 169565 GCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTAC 169624 | || | || || || || || |||||| ||| ||| ||||||||||| ||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 169625 AACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATG 169684 || |||||||||| | || |||| | |||||| | | || | | ||| ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 169685 GGTCGTGAGTGGGAATTGTCCTATC-GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTA 169743 ||||||||||||||| | | | || |||||||||||| |||||||| |||||| | Sbjct 515815 GGTCGTGAGTGGGAACT-TAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAA 515757 Query 169744 CTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTC 169803 || ||||| ||| | || || | ||||||||| || | ||||| |||| ||||| Sbjct 515756 TTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAG 515697 Query 169804 GTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCA 169863 |||||||| | ||||||| | || |||| || || || |||| ||| | || ||| | Sbjct 515696 TTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGA 515637 Query 169864 AGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGC 169911 | |||||||||||||| ||||| || || |||||| | ||||| || Sbjct 515636 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq2645 Length=47068 Score = 185 bits (204), Expect = 1e-41 Identities = 275/389 (71%), Gaps = 1/389 (0%) Strand=Plus/Minus Query 169343 TGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTC 169402 |||| || ||||| |||||| |||| ||| || || ||||| || |||| ||||| Sbjct 45802 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 45743 Query 169403 GGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATC 169462 || || |||||||||| | | || | |||| || || || |||||||||||| Sbjct 45742 GGGGTTTTGATGATCCCTACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATC 45683 Query 169463 GGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTAT 169522 | || || || || || || || || || || || || ||| |||||||||| | ||| Sbjct 45682 GCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTAT 45624 Query 169523 GGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTC 169582 || ||||| || ||||||||||| || | || |||| | ||||| | || || Sbjct 45623 GGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTT 45564 Query 169583 TATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAA 169642 || || || |||||||| ||| | ||||||||||| ||||| |||||||||| | Sbjct 45563 TACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAG 45504 Query 169643 CTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTG 169702 || |||| | || ||| | | || | | ||| |||||||||||||||||| | Sbjct 45503 CTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 45444 Query 169703 TCCTATCGTCTGGGTATGCGCCCTTGGAT 169731 | |||||||||||||| |||||||| Sbjct 45443 AGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 179 bits (198), Expect = 4e-40 Identities = 274/389 (70%), Gaps = 1/389 (0%) Strand=Plus/Plus Query 169343 TGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTC 169402 |||| || ||||| |||||| |||| ||| || || ||||| || |||| ||||| Sbjct 1023 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 1082 Query 169403 GGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATC 169462 || || |||||||||| | | || | |||| || || || |||||||||||| Sbjct 1083 GGGGTTTTGATGATCCCTACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATC 1142 Query 169463 GGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTAT 169522 | || || || || || || || || || || || || ||| |||||||||| | ||| Sbjct 1143 GCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTAT 1201 Query 169523 GGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTC 169582 || ||||| || |||||||||| || | || |||| | ||||| | || || Sbjct 1202 GGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTT 1261 Query 169583 TATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAA 169642 || || || |||||||| ||| | ||||||||||| ||||| |||||||||| | Sbjct 1262 TACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAG 1321 Query 169643 CTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTG 169702 || |||| | || ||| | | || | | ||| |||||||||||||||||| | Sbjct 1322 CTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 1381 Query 169703 TCCTATCGTCTGGGTATGCGCCCTTGGAT 169731 | |||||||||||||| |||||||| Sbjct 1382 AGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 120 bits (132), Expect = 4e-22 Identities = 147/200 (74%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 170060 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCAC 170119 ||||| || ||||| | ||||||||||| ||| ||||||||||| ||||| | ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 170120 TTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACG 170179 ||||| || || |||||||| | || ||||||||||| ||| | ||| | || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 170180 ATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 170239 ||||| |||||||| || |||||||| |||||||| || | | ||| | || ||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 24695 Query 170240 GTGCTCAACACCTGGGCAGA 170259 | | || || ||||| || Sbjct 24694 CTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/207 (69%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 169783 CTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTT 169842 |||||| ||| ||||| || ||| | | |||| || | || ||||| || || || Sbjct 126731 CTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTT 126672 Query 169843 TAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCT 169902 |||| ||| | || ||||| || ||||||||||||| | ||| || || ||||| | Sbjct 126671 CAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTT 126612 Query 169903 TGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCAC 169962 ||||| || || || || || || || || || || || ||||| || | | || || Sbjct 126611 AGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAAC 126553 Query 169963 TTCGAGTCTTGTCCGTGAAACCACCGA 169989 || ||| | || | || ||||| || Sbjct 126552 CTCTAGTTTGCTCAGGGAGACCACTGA 126526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592113804458560