Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq922 122 9e-23 >seq922 Length=8123900 Score = 122 bits (134), Expect = 9e-23 Identities = 559/874 (64%), Gaps = 21/874 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||| | || || || || ||||| || |||| || || || | Sbjct 2994329 TTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGTT 2994270 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| || || | | | | |||||| |||||| | | | Sbjct 2994269 CCATCCAATCAAATGGGTTTTGAACCCCATAGATTTTATCACACCCCAAAGCATTCAACA 2994210 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||||| || |||||||| || || |||| ||| | | || ||||||||| | ||| Sbjct 2994209 GCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCACTAGA- 2994151 Query 16854 GTACCGG--AAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | || || ||| || || | |||| | |||||| | || | |||| | | || Sbjct 2994150 GCACAGGGCAAG-GCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTACTAT 2994092 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGT--TTAAGATGTTTAAACATCAGACATGCG 16969 | | ||| | || | || || | ||| || ||| | | | | | || || || Sbjct 2994091 ATTTTGAACGCTTTGTT--GAGGGAGCTTGTGGTTTAGAAGATCATAGAGAAGGCAAGCA 2994034 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||| || ||||| || || ||||| || ||||| ||||| || || || || ||| Sbjct 2994033 AAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCAGGC 2993974 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || | ||| |||| ||||||||| | || ||||||||||| ||||| Sbjct 2993973 ATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATACCT 2993914 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TC-GCGTCTTTGTTACGAATC 17146 || || | ||||| || || || | || || | | || | | ||| ||| Sbjct 2993913 TCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTG------ATC 2993860 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 ||||| || |||| || ||||||| | || | |||||| | ||| | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 17207 AATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 ||| ||||| | ||| | || | || || | || | | ||||||||||| || Sbjct 2993799 AATCGACTCTTCTCACTGGAA-TCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCTC 2993741 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTT 17324 ||||| ||||| || ||||| ||||| || || || ||||| | || || || | || Sbjct 2993740 AGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGC-CCTAGCCTCTGCAACTT 2993682 Query 17325 GAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 |||| ||| |||||| |||| || ||||| || || || || || || | Sbjct 2993681 GAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAA 2993622 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCT 17444 | || || | | ||| | ||||| | |||||| | | || ||| ||||| || Sbjct 2993621 AGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCT 2993562 Query 17445 TTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTAT 17504 | |||| || | ||| || ||||| | ||||| ||| ||| |||| || |||| Sbjct 2993561 GAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTAT 2993502 Query 17505 ACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| | |||||| | |||| |||||| || Sbjct 2993501 ACATCTCCCAAATTTGGGGATATTTTATGGGAAA 2993468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517508427287280