Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3426 102 7e-17 seq21 89.7 4e-13 >seq3426 Length=3004207 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||||||| || || | Sbjct 2138991 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGC 2139050 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || || | | || | ||| || || || ||||| || | || |||| Sbjct 2139051 TCTGATACAGTTGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGAT 2139110 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||| | || ||||| || |||||||| || |||||| | ||| | || |||||| Sbjct 2139111 CAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTAC 2139170 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| |||||||||||||||||||| |||| | || | |||||||| Sbjct 2139171 AATATCCAGAAGGAATCTACTCTTCATCTGGTTCTGAGACTCAGAGGAGGG 2139221 >seq21 Length=3941259 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || ||||| ||||| ||||||||| || ||| | || Sbjct 1372216 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTTGAAAGCTCA 1372275 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| |||||| || || || ||| | ||| || || Sbjct 1372276 GATACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 1372335 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || || ||||| || ||||| || || ||| | || | || || || ||| Sbjct 1372336 CAAAGGCTAATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTTGCTGACTATAAT 1372395 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||| || |||||||||||| |||| Sbjct 1372396 ATCCAGAAAGAGTCTACTCTTCACTTGGT 1372424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428306003897630