Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq21 134 1e-26 seq461 118 9e-22 seq3426 91.5 1e-13 >seq21 Length=3941259 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || ||||| | ||||| ||| | ||||||||||| || || || ||||| | Sbjct 1372671 TTCCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGG 1372612 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| || | ||||| ||||||||||| ||| ||||||| ||||||||||| | Sbjct 1372611 CAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCG 1372552 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || || || ||||| | | | ||||| | ||| Sbjct 1372551 GGATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAA 1372492 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||||||| || || ||||||||||| |||||||| Sbjct 1372491 CCTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | |||||||| ||| | ||||||||||| || || || ||||||||| Sbjct 1372897 CCCCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCC 1372838 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| || || ||| | || | |||||||| || || Sbjct 1372837 AGGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGA 1372778 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCT--CCG 21126 | || |||||||| |||||| ||||| | | | | ||||| || ||| || Sbjct 1372777 ATCCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCAATGGTATC--CGAGCTTTCCA 1372720 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | ||||||||||||||||| | || || ||||| || |||||| Sbjct 1372719 CTTCAAGAGTAATGGTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || |||||||| |||| || | ||| ||||| || || || |||||||| || Sbjct 1372441 CCCCCACGAAGCCTGAG-ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCA 1372383 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||| |||||||| || ||| |||| || || |||||||| ||| Sbjct 1372382 AGGGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGA 1372323 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||||| | | | | ||||| | || Sbjct 1372322 ATACCCTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACC 1372263 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||||||| || || || ||||| || |||||||| Sbjct 1372262 TCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || ||||||||||||| ||| | ||| ||||| || || ||||| ||||| || Sbjct 1372214 CCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCA 1372155 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| || || || || ||| |||| ||||| |||||||| || Sbjct 1372154 AGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGA 1372095 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | | | ||| ||| | ||| Sbjct 1372094 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACC 1372035 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || || | || |||||||| || ||||| Sbjct 1372034 TCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || ||||||||||||| || | |||||||||||||| || || || || || Sbjct 1371986 CCCCCACGAAGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCA 1371927 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | ||||| || || || || ||| | || || |||||||| || ||| Sbjct 1371926 AGAGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGG 1371867 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC-CG- 21126 | || ||||| || ||||| ||||| | ||| ||| | ||| |||| || Sbjct 1371866 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTGT--CCGAGCTCTCGA 1371809 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || || | || |||||||| || ||||| Sbjct 1371808 CCTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 >seq461 Length=5900637 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 |||||||| || | || | |||||||||||||| ||||||||||| || || || || Sbjct 2469169 AGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGG 2469110 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | ||||||| || || || ||| |||| | |||||||||||| ||| | ||||||| Sbjct 2469109 CCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCC 2469050 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 ||||| |||||| || || | | | | || ||| | ||| |||| ||| Sbjct 2469049 TTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTG 2468990 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || |||| ||||| ||||| || ||||| Sbjct 2468989 ATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| ||||||||||||| || | || ||||||||||||||||| || || || Sbjct 2469406 CCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCA 2469347 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||| ||| || || ||| | || || || ||||| || || Sbjct 2469346 AGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGG 2469287 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | |||||| | ||| Sbjct 2469286 ATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACC 2469227 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || |||| |||||||| || |||||||| Sbjct 2469226 TCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || |||||||| |||| || | |||||||||||||||||||| |||||||| Sbjct 2469862 CCCCCACGAAGCCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCG 2469803 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| | || || || || | || || ||||| ||||| || Sbjct 2469802 AGAGTACGACCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGG 2469743 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| || || | | | ||||| | ||| Sbjct 2469742 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACC 2469683 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||||||||| || || | ||||| ||||| || ||||| Sbjct 2469682 TCCAGGGTAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 |||||||| || | || | ||||||||||| || |||||||| || || || || | Sbjct 2468941 AGCCTGAGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGT 2468882 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || |||| || || || ||| |||| | |||||||||||| ||| | ||||||| Sbjct 2468881 CCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCC 2468822 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 ||||| ||||||| || || | | ||| || ||| | ||| || | || Sbjct 2468821 TTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTGTCAGAGCTCTCTACCTCGAGAGTG 2468762 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || || || || || ||||| || ||||| Sbjct 2468761 ATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 2468724 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || ||||| ||||||| ||| | ||||||||||| ||||| |||||||| || Sbjct 2469634 CCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCG 2469575 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||| || || || ||| |||| | || |||||||| ||| Sbjct 2469574 AGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGG 2469515 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | || |||||||| |||||| Sbjct 2469514 ATTCCCTCCTTGTCCTGGATCTT 2469492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| | |||||| |||| ||| | ||||||||||| || || || || || |||| Sbjct 2470087 CCCCTC--AACCTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCA 2470030 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || | ||||||| || ||||| ||| | || || || |||||||| || | Sbjct 2470029 GAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGA 2469970 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||||||||| |||||| ||||| | ||| || || | ||| | Sbjct 2469969 TGCCTTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAACCT 2469910 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || ||||| || || | || |||||||| |||||||| Sbjct 2469909 CCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 >seq3426 Length=3004207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || || |||| ||| | ||| || ||||| || || || || || || Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | || || ||||||||||| || | || || | ||||| || || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | | | || |||||| | ||| Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACC 2139041 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | |||||||||||| || |||| ||||| || || || |||||||| Sbjct 2139040 TCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229629452136