Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3426 125 7e-24 seq1199 113 5e-20 seq461 109 6e-19 seq21 109 6e-19 seq5571 87.8 2e-12 seq5 84.2 2e-11 >seq3426 Length=3004207 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| || ||||| || ||||| ||| | || ||||| | Sbjct 2138991 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGC 2139050 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | || | | |||||| || || | ||||||||||||||||| | || Sbjct 2139051 TCTGATACAGTTGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGAT 2139110 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| ||||||| ||| ||||||||||| || || | || || || || ||| Sbjct 2139111 CAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTAC 2139170 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||||| | || || ||||| || Sbjct 2139171 AATATCCAGAAGGAATCTACTCTTCATCTGGT 2139202 >seq1199 Length=7341449 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||||||||| || || ||||| ||||| || | || ||||| | Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | | | |||||| ||||| | |||||||||||||| || | || Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGAT 1127751 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| ||||||| ||| || || ||||| || || | || ||||| || ||| Sbjct 1127750 CAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTAC 1127691 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| ||| | || || ||||| || Sbjct 1127690 AATATCCAGAAAGAGTCGACTCTTCATCTGGT 1127659 >seq461 Length=5900637 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||| ||| | || || || | || Sbjct 2470092 ATGCAGATTTTTGTTAAGACTCTTACTGGAAAGACCATTACCCTTGAGGTGGAGAGCTCC 2470151 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||||||| ||||| ||||||||||| | |||||| Sbjct 2470152 GATACCATTGACAATGTCAAGGCGAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 2470211 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || || || ||||| || || | | | ||||| || ||||| Sbjct 2470212 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAAT 2470271 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||||| || |||| Sbjct 2470272 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTGCG 2470306 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || ||||||||||| | || || || | Sbjct 2469408 ATGCAAATTTTTGTGAAGACCCTCACTGGTAAAACCATCACTTTGGAGGTTGAGAGTTCA 2469467 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| ||||| |||||| | |||||| Sbjct 2469468 GACACTATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 2469527 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | || || || || |||| || | || |||||| |||||| || Sbjct 2469528 CAAAGGTTGATTTTTGCCGGTAAGCAATTGGAAGATGGCCGTACCCTCGCCGACTATAAT 2469587 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| |||| || ||||| ||| Sbjct 2469588 ATTCAGAAGGAGTCCACACTCCATCTGGTG 2469617 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || || ||||| | || || || | | Sbjct 2469864 ATGCAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCG 2469923 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| ||| |||| ||||| || |||||||| | |||||| Sbjct 2469924 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 2469983 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || ||||| || |||| || | | || || || ||||| Sbjct 2469984 CAAAGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAAT 2470043 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||| | || | | |||||||| ||| Sbjct 2470044 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCAGGTTGAGGGGTGGC 2470091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || || |||||||||||| | || || || | | Sbjct 2468952 ATGCAGATCTTTGTTAAAACCCTAACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCT 2469011 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||| || | ||||| || ||||| ||| | |||||| Sbjct 2469012 GACACCATAGACAATGTAAAGGCAAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAG 2469071 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || || || || |||| || | || || || ||||| ||| Sbjct 2469072 CAGAGATTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTGCTGACTATAAC 2469131 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| |||| || || || || Sbjct 2469132 ATCCAAAAGGAGTCCACACTCCACCTTGT 2469160 >seq21 Length=3941259 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || ||||| ||||| ||| | || || || | | Sbjct 1372443 ATGCAAATTTTTGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCG 1372502 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | |||| ||||||| || || ||||| ||||| | ||||| Sbjct 1372503 GATACAATTGATAACG-TGAAGGCCAAAATTCAAGATAAGGAGGGAATCCCGCCTGACCA 1372561 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | || ||||||||||| || || | || ||||| ||||||||| Sbjct 1372562 GCAGAGGCTTATTTTTGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCCGACTACAA 1372621 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||||||| |||| || ||| | |||||| Sbjct 1372622 TATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 1372655 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||| || |||| ||||| | | Sbjct 1371988 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTCT 1372047 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| ||||| || || | ||||| Sbjct 1372048 GACACTATTGACAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 1372106 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| || | || || || || || || || | || || || ||||||||| Sbjct 1372107 GCAAAGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAA 1372166 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||| ||| | || || ||| | ||| Sbjct 1372167 CATCCAGAAAGAGTCTACTCTCCATTTGGTG 1372197 >seq5571 Length=10537363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| ||||| || ||||||||| | ||||||||| | ||||||| || || || ||| Sbjct 10537359 ATTCAAGACAAGGAAGGCATCCCCCCCGACCAGCAAAGGCTCATCTTTGCAGGGAAGCAG 10537300 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || || | || ||||| || |||||||||||||||||| | || || || || Sbjct 10537299 CTCGAGGATGGTCGTACCCTTGCGGATTACAACATCCAGAAGGAGTCTACCCTCCACCTT 10537240 Query 40897 GTG 40899 ||| Sbjct 10537239 GTG 10537237 >seq5 Length=3793322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| || ||||||||| || |||||||| | ||||||| || || || Sbjct 2 AAGATTCAAGACAAGGAAGGCATCCCCCCG-ACCAGCAAAGGCTCATCTTTGCAGGGAAG 60 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || ||||| || |||||||||||||||||| | || || || Sbjct 61 CAGCTCGAGGATGGTCGTACCCTTGCGGATTACAACATCCAGAAGGAGTCTACCCTCCAC 120 Query 40894 CTAGTG 40899 || ||| Sbjct 121 CTTGTG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515182194380960