Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq21 105 1e-17 seq461 93.3 6e-14 seq531 84.2 3e-11 >seq21 Length=3941259 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| || | ||||| | || ||||| || || || | ||| ||||| || | Sbjct 1372216 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTTGAAAGCTCA 1372275 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || | || ||||||||||| || || ||||| || ||||| || Sbjct 1372276 -GATACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCTGACCA 1372334 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||| |||||||| || ||||| | |||||| | | || | | || ||||| Sbjct 1372335 GCAAAGGCTAATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTTGCTGACTATAA 1372394 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| || ||||| || ||| | || ||||| Sbjct 1372395 TATCCAGAAAGAGTCTACTCTTCACTTGGT 1372424 Score = 102 bits (112), Expect = 1e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || | || ||||| || || || | ||| |||| ||| Sbjct 1372443 ATGCAAATTTTTGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCG 1372502 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || |||||||||||||| || || || || ||||| || Sbjct 1372503 -GATACAATTGATAACGTGAAGGCCAAAATTCAAGATAAGGAGGGAATCCCGCCTGACCA 1372561 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||||||||| || ||||| | |||||| | || || | | || || || Sbjct 1372562 GCAGAGGCTTATTTTTGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCCGACTACAA 1372621 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||| || || || || || | |||||||| || Sbjct 1372622 TATCCAGAAGGAGTCCACACTCCATTTGGTGTT 1372654 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | ||| Sbjct 1372670 AATGCAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTC 1372729 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || ||| || ||||| || || || || ||||||||||| Sbjct 1372730 GGATACCATTGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGGATTCCACCTGATCA 1372789 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | |||||| |||| || | | || || || Sbjct 1372790 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTGGCGGACTACAA 1372849 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| || || || || || | |||||||| Sbjct 1372850 TATCCAGAAGGAGTCCACCCTCCATTTGGT 1372879 >seq461 Length=5900637 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || ||||| || ||| | ||| |||| || | Sbjct 2469408 ATGCAAATTTTTGTGAAGACCCTCACTGGTAAAACCATCACTTTGGAGGTTGAGAGTTCA 2469467 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || || || || || || || ||||| || Sbjct 2469468 -GACACTATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCA 2469526 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| || || ||||| || ||| | || || | | || ||||| Sbjct 2469527 GCAAAGGTTGATTTTTGCCGGTAAGCAATTGGAAGATGGCCGTACCCTCGCCGACTATAA 2469586 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT-TTTACGTTTACGAGGTGGTAT 124768 |||||| || || || || | ||| |||| ||| | || || || ||||| Sbjct 2469587 TATTCAGAAGGAGTCCACACTCCATCTGGTGCTTAGGCTT-CGTGGGGGTAT 2469637 Score = 86.0 bits (94), Expect = 9e-12 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || || || || || || || || | ||| |||| ||| Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || || || || ||||| || || || || || Sbjct 2469696 -GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCA 2469754 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || || || || || |||||||||||| |||| || | | || || || Sbjct 2469755 ACAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAA 2469814 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || || || | || |||||| | | | || || ||||| ||| || Sbjct 2469815 CATTCAAAAGGAGTCCACCCTCCACTTGGTTCTCAGGCTTCGTGGGGGTATGCAAATTT 2469873 >seq531 Length=5369156 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 202838 TCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCT 202897 ||||||||||| || |||||||||||||| |||||||| ||||||||||| || |||||| Sbjct 977655 TCATGAATACCGCATATTGACCACATACAGCCAACATAGCCATTTGGATCTCGACCATCT 977714 Query 202898 A 202898 | Sbjct 977715 A 977715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755401739372800