Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq21 132 4e-26 seq461 129 5e-25 seq2419 125 6e-24 seq1199 120 3e-22 seq3426 107 2e-18 seq5571 82.4 7e-11 >seq21 Length=3941259 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||||||||| |||| ||| ||||| || || || ||||| ||| Sbjct 1372669 CCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCA 1372610 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| |||||||| ||||| | || || | |||||| || || || Sbjct 1372609 AGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGG 1372550 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| ||| |||||| || || | || | || |||| |||||| ||| Sbjct 1372549 ATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACC 1372490 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | ||| | || ||||| |||| ||||| |||||||| |||||| Sbjct 1372489 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCATG 1372442 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| ||||||||||| || |||||||| ||| | ||| || |||||| Sbjct 1372197 CACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTC 1372138 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| || || ||||| | || || | ||||| || ||||| || |||||||||||| Sbjct 1372137 GAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTG 1372078 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||||| | |||||||||||||| || | || || Sbjct 1372077 AATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTT 1372018 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 1372017 CCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| ||||| ||||| || |||||||| | ||| | |||||| Sbjct 1371969 CACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTC 1371910 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || ||||| ||||||| | ||||||||| || || || |||||||| || Sbjct 1371909 AAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTG 1371850 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||||| |||||||||||| | || | || || Sbjct 1371849 AATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGAGTAATGGTCTT 1371790 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 1371789 CCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||||| || || || ||||| || || || || |||||| Sbjct 1372880 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTC 1372821 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| | | ||||||||| || || || |||||||||||| Sbjct 1372820 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTG 1372761 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||| |||| ||| || || || | || | || || Sbjct 1372760 GATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTT 1372701 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || |||||||||||||| Sbjct 1372700 GCCGGTCAGGGTCTTAACAAAAATCTGCAT 1372671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||||||||| || || || || || | || | |||||| Sbjct 1372424 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCA 1372365 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| | || || | ||||| || || || || |||||||||||| | Sbjct 1372364 AGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGA 1372305 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | || || | ||| || ||||| | ||| | || ||| Sbjct 1372304 ATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTG 1372245 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || ||||| |||||| Sbjct 1372244 CCAGTCAAGGTCTTGACGAAAATTTGCATG 1372215 >seq461 Length=5900637 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| |||||||||||||| || | ||| || |||||| Sbjct 2469844 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTCT 2469785 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || |||||| ||||||| | ||| || |||||||| || || |||||||| Sbjct 2469784 AATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTGG 2469725 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | ||| |||| |||||| ||||| | ||| | || || Sbjct 2469724 ATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCTTT 2469665 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| |||||||| Sbjct 2469664 CCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| ||||||||||||||||| | |||||| |||||| Sbjct 2469389 CACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCATCCTC 2469330 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || ||||| ||||||| | |||||||||||||| || || |||||||| Sbjct 2469329 CAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCCTG 2469270 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | || || | |||||||||||| | ||| | || || Sbjct 2469269 GATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTGATTGTCTT 2469210 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| || || || |||||| Sbjct 2469209 CCCAGTTAGGGTTTTGACGAAGATTTGCATG 2469179 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || |||||||| | || | | ||| || ||||| || ||| Sbjct 2470288 GTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCTTCAAGCTGCTTCCCA 2470229 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| || || || |||||||||||||| |||||| || Sbjct 2470228 GCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTG 2470169 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | |||||| ||||| | ||| | || || || || ||||| Sbjct 2470168 ACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTAATGGTCTTTCCAGTAAGAGTC 2470109 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||||||||||||| Sbjct 2470108 TTAACAAAAATCTGCATG 2470091 >seq2419 Length=5026 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| |||||||||||| || || || |||||||||||| |||||| Sbjct 4968 GTCGACTCCTTTTGGATGTTGTAATCGGCCAATGTACGGCCATCCTCGAGCTGCTTTCCA 4909 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | |||||||| || || || || |||||||| ||| || || ||| Sbjct 4908 GCAAAGATCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGGATCTTAGCCTTA 4849 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||||| |||||| ||||| | || | || ||||| || || || Sbjct 4848 ACATTGTCAATGGTGTCCGAGCTCTCAACCTCAAGAGTAATAGTCTTGCCTGTAAGGGTC 4789 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 4788 TTAACAAAGATCTGCAT 4772 >seq1199 Length=7341449 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570 ||||| | | ||||| |||| || | || |||||||| || || |||||||| ||| Sbjct 1127641 CCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT 1127700 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||| |||||||| || || ||| ||||||| || || ||||| || || Sbjct 1127701 -AGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGG 1127759 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||| ||||| ||||| || || | |||| || || | ||||||||| Sbjct 1127760 TATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGAC 1127819 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || ||||| || || |||||||| || |||||||| Sbjct 1127820 CTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq3426 Length=3004207 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570 ||||| | | ||||| |||| || | ||||| || || || || |||||||| ||| Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||| || |||||||| || ||| ||||||| || |||||||| || || Sbjct 2139160 AGT-GTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGG 2139102 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||| ||||| || || || || | || || || || | ||||||||| Sbjct 2139101 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGAC 2139042 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 2139041 CTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2138994 >seq5571 Length=10537363 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| |||||||| || || ||||||||||| | || || |||||| Sbjct 10537237 CACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCATCCTC 10537296 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 |||||| || || || ||||||| | ||||| ||||| || ||||| ||||||||| Sbjct 10537297 GAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGGGGGGATGCCTTCCTTGTCT 10537354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433800019128232