Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq461 105 8e-18 seq1199 98.7 1e-15 seq21 96.9 4e-15 seq3426 93.3 5e-14 seq3001 91.5 2e-13 >seq461 Length=5900637 Score = 105 bits (116), Expect = 8e-18 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | ||| | ||| |||||| || |||||||||||||| || |||| | | Sbjct 2470306 CGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCA 2470247 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||| | ||||||||| | || | || ||||||| Sbjct 2470246 TCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTG 2470187 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| |||| | |||| | | | || || |||| ||||| || | || Sbjct 2470186 TCC-TGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTC---TCCACCTCAAGGGT 2470131 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || || ||||| ||||| || ||||| Sbjct 2470130 AATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||||||||| ||||| || || ||||| || | || ||| Sbjct 2469844 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTCT 2469785 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||||||||||| ||||| | ||| ||||||| || | | ||||||||| | Sbjct 2469784 AATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTGG 2469725 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || ||| |||| | | | || || |||| || || || | || ||||| Sbjct 2469724 ATCTTTGCCTTGACATTATCAATGGTATCCGAGCTC---TCAACCTCCAGGGTAATGGTC 2469668 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || || |||||||| ||||| Sbjct 2469667 TTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| |||||| || |||||||||||||||||||||| | || || Sbjct 2470072 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCC 2470013 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||| || || || || || | |||||||| | || | || ||||||||| || Sbjct 2470012 AATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCC-TG 2469954 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | | |||| || | | | | ||||| |||| || || || | ||||| || Sbjct 2469953 AATCTTTGACTTCACATTATCGATGGTGTCCGAGCTC---TCAACCTCCAATGTGATCGT 2469897 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| ||||| |||||||| Sbjct 2469896 CTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 |||| ||||||||| || || || ||||| ||||| || | || || | ||||| || Sbjct 2469149 TGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCC 2469090 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 ||| || || | || ||||||||| | || | || ||||||||| || ||| || Sbjct 2469089 AGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTT 2469030 Query 43106 GAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | | ||||| |||| || || || | ||||||||||| || ||||| Sbjct 2469029 TACATTGTCTATGGTGTCAGAGCTC---TCAACCTCCAGGGTGATGGTTTTCCCAGTTAG 2468973 Query 43163 CGTCTTTACAAAGATTTGCAT 43183 || || |||||||| ||||| Sbjct 2468972 GGTTTTAACAAAGATCTGCAT 2468952 >seq1199 Length=7341449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | | || |||| ||| | || ||| || || ||||||||||| || Sbjct 1127640 TCCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGC 1127699 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||||||||| ||||| ||||| || || || || | || Sbjct 1127700 TAGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGG 1127759 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | || ||| |||||| |||||| |||| | | | ||| || |||| || Sbjct 1127760 TATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTC---TC 1127816 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || | || ||||| ||||| ||||| || ||||| ||||| ||||| || Sbjct 1127817 GACCTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 >seq21 Length=3941259 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | |||| ||||||||| |||||||||||||| ||||| | | || || Sbjct 1371969 CACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTC 1371910 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||||||||| || ||||| | |||||| || | || | | |||||| ||| | Sbjct 1371909 AAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCC-T 1371851 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | || | || | | | | ||||| |||| || || || | || |||| Sbjct 1371850 GAATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTC---TCGACCTCAAGAGTAATGG 1371794 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || ||||| |||||||| ||||| Sbjct 1371793 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||| | || ||| || || || ||||| || || |||||||| | || || Sbjct 1372197 CACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTC 1372138 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||||||||| || || |||| |||||||| | || | | |||||||| | | Sbjct 1372137 GAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGT-CTT 1372079 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | || | | ||| | | | ||||| |||| || || |||| || |||| Sbjct 1372078 GAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTC---TCGACCTCGAGAGTAATGG 1372022 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || ||||| |||||||| ||||| Sbjct 1372021 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||||||| | |||| |||||| || |||||||| || || || ||||| | || Sbjct 1372655 CAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATC 1372596 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || ||||| || ||||| || || || | ||||||||| | ||| | | |||||| | Sbjct 1372595 CTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTAT- 1372537 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGA 43146 | ||| |||| | || | | | | || || |||| || || || | || | Sbjct 1372536 CTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTC---TCAACCTCCAAGGTAA 1372480 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | || || ||||| |||||||| Sbjct 1372479 TGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq3426 Length=3004207 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||| ||| | || ||||| || |||||||||||||| Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || || ||||| ||||| || ||||| || | || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||| |||||| ||| || |||| | | || || || |||| || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTC---TCG 2139044 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || | || ||||| || |||||||| || || || ||||| |||||||| Sbjct 2139043 ACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq3001 Length=2574463 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | || ||| | ||| | ||| ||||| || |||||||||||||| Sbjct 511768 CCACCTCTCAACCTCATCACAAGATGAAGGGTGGATTCCTTCTGTATATTGTAATCAGCA 511709 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| ||| | |||||||| ||||| ||||| ||||| |||| || ||||| | || Sbjct 511708 AGAGTTCGCCCATCATCTAGTTGCTTGCCAGCAAATATCAGTCTTTGTTGGTCAGGAGGA 511649 Query 43077 ACGCTCTCCTTGTCC 43091 | | |||||| ||| Sbjct 511648 ATTCCCTCCTTATCC 511634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571776529200880