Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3001 98.7 1e-15 seq21 86.0 9e-12 >seq3001 Length=2574463 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | || | ||| | || ||||| || |||||| ||||| | | Sbjct 511768 CCACCTCTCAACCTCATCACAAGATGAAGGGTGGATTCCTTCTGTATATTGTAATCAGCA 511709 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | |||||||| ||| || |||||||| |||| |||||| || || |||||| Sbjct 511708 AGAGTTCGCCCATCATCTAGTTGCTTGCCAGCAAATATCAGTCTTTGTTGGTCAGGAGGA 511649 Query 146171 ATTCCTTCTTTATC 146184 ||||| || ||||| Sbjct 511648 ATTCCCTCCTTATC 511635 >seq21 Length=3941259 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| || | |||||||| | |||||| ||||| || || || || | | Sbjct 1372214 CCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCA 1372155 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| || ||||||||||| | ||||||||| || |||||| Sbjct 1372154 AGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGA 1372095 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 1372094 ATACCCTCCTTGTCTTG 1372078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743472996216320