Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq461 105 4e-18 seq1199 91.5 1e-13 seq3426 87.8 1e-12 seq21 82.4 5e-11 >seq461 Length=5900637 Score = 105 bits (116), Expect = 4e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| || || ||||| | || || || || ||||| ||||| | || |||| Sbjct 2469169 AGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGG 2469110 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || ||||| ||||| || || ||||| | | ||||||||| ||| | || ||| Sbjct 2469109 CCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCC 2469050 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||||| ||||| || | |||| | || | || || |||| ||| Sbjct 2469049 TTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTG 2468990 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || ||||| |||||||||||||| Sbjct 2468989 ATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| |||||||| || | || || ||||| || || ||||||| Sbjct 2469634 CCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCG 2469575 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || ||||| ||||| || || ||||| | || |||||||| ||| Sbjct 2469574 AGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGG 2469515 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | || | || || Sbjct 2469514 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAACC 2469455 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || ||||| || |||||||| || ||||| Sbjct 2469454 TCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || ||||| ||||||| ||| | ||| || || || |||||||| || | Sbjct 2469406 CCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCA 2469347 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||||||||| || || || ||||||| ||||| ||| || Sbjct 2469346 AGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGG 2469287 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||||| || | | || | ||| | ||||| Sbjct 2469286 ATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACC 2469227 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 2469226 TCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || || || || ||||||||||| | Sbjct 2469862 CCCCCACGAAGCCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCG 2469803 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || || ||||| || ||||| ||||||| ||| |||||| || Sbjct 2469802 AGAGTACGACCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGG 2469743 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| |||||| ||| | || | || | ||| | || || Sbjct 2469742 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACC 2469683 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || || ||||| |||||||||||||| Sbjct 2469682 TCCAGGGTAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 >seq1199 Length=7341449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || ||||| ||||| || | ||| |||||||| || ||||| || | || ||| Sbjct 1127650 AGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGTTCGG 1127709 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || || | |||||| |||||||| ||||| || || || || || | || ||| Sbjct 1127710 CCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCT 1127769 Query 34292 TTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCG 34349 ||||| || ||||| ||| | || | | |||| ||||| ||||| || | | Sbjct 1127770 TTGTC--CTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAGAG 1127827 Query 34350 TGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | ||||| ||||| || || ||||| || |||||||||||| Sbjct 1127828 TAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATC 1127868 >seq3426 Length=3004207 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || ||||| ||||| || | |||| ||| ||||| || ||||| || | || ||| Sbjct 2139211 AGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGG 2139152 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || || | ||| ||||||||||| ||||| || ||||| || || | || ||| Sbjct 2139151 CCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCT 2139092 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | || | | | | ||| | ||||| || | || Sbjct 2139091 TTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACCTCAAGGGTA 2139032 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||| ||||||||||| Sbjct 2139031 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2138994 >seq21 Length=3941259 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| || | |||| |||||||| ||||||||||||| Sbjct 1372214 CCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCA 1372155 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||| || || ||||| || | |||||||| || Sbjct 1372154 AGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGA 1372095 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | ||||| Sbjct 1372094 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACC 1372035 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || || ||||| || || ||||||||||||||| Sbjct 1372034 TCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATC 1371987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323049375469760