Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq922 159 3e-34 >seq922 Length=8123900 Score = 159 bits (176), Expect = 3e-34 Identities = 565/870 (65%), Gaps = 27/870 (3%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 ||| ||||| ||||| ||||| | ||| ||||| ||||||||||| || || || | Sbjct 2994343 CATCACTGAAGCCTTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTG 2994284 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCAT 16048 | |||||| |||||| ||||||| || |||| |||| |||| |||||| || Sbjct 2994283 CAGTGAAATGAGTTCCATCCAATCAAATGGGTTTT--GAACCCCATAGATTTTATCACAC 2994226 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | ||| | ||||| ||||||||||| || ||||| |||| | || | | Sbjct 2994225 CCCAAAGCATTCAACAGCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCG 2994166 Query 16109 TTCATTCCTATTAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| | | | |||||| | || || | ||| | | | ||||| | || Sbjct 2994165 TTCATTCCCACT-AGAGCACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTAC 2994107 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTAT-TTAACGGAG-----GGTTTAATAAGTG 16221 | ||| | | ||||| || || || | || | |||| |||||| | | Sbjct 2994106 AGATTCCCTTACTATAT---TTTGAACGCTTTGTTGAGGGAGCTTGTGGTTTAGAA---G 2994053 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | | | | | |||||||||||||| || || ||||| || || || | || || Sbjct 2994052 ATCATAGAGAAGGCAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATT 2993993 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 || || || | ||| ||||||| || | |||||| | ||||||||| | ||| Sbjct 2993992 AGAGAAGGTTAAACCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACT 2993933 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401 |||||||||||| ||||||||||| |||||| |||| ||| | ||| | | | | Sbjct 2993932 ACCAGAAAAGAAGATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTC 2993873 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 | | | ||||||||| ||||| | |||||||| ||||||| | | Sbjct 2993872 AGAGGAA---TTGATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGT 2993816 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || | || | || || | | || || || ||| || |||| || | | Sbjct 2993815 TTCAACAGCCCTGAACAATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAA 2993756 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATC 16580 | || ||||| || || || || || || || || ||||| || ||||| ||||| | Sbjct 2993755 GAGGCTGTACATCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGC-CC 2993697 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 |||| || | | ||| || || || | | || | |||||| ||||| | Sbjct 2993696 TAGCCTCTGCAACTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATAC 2993637 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt--CGTTATCTGA 16698 |||| ||||||||| || ||||| | || | || || | ||||| | | ||| Sbjct 2993636 CATCAGAAGCTGCAAAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGA 2993577 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 || | ||||| || |||| || | |||||||||||| ||||||| ||||| Sbjct 2993576 GAGAAT--CCCAGTGCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGA 2993519 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATAT 16788 || | || || |||||||| | ||| || Sbjct 2993518 GGCCTCTGCTTTCTTATACATCTCCCAAAT 2993489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462478780075600