Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq922 154 1e-32 seq557 104 2e-17 >seq922 Length=8123900 Score = 154 bits (170), Expect = 1e-32 Identities = 572/881 (65%), Gaps = 33/881 (4%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||| ||||| | ||| || || |||||||| ||||| || || | |||||| || | Sbjct 2994330 TTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGT 2994271 Query 13973 TCCATAAAATCAAATGGATTTGTTGA--CATAAACACTTTATCACAACCTAG----TTCT 14026 ||||| |||||||||| ||| ||| | | | | ||||||||| || | ||| Sbjct 2994270 TCCATCCAATCAAATGGGTTT--TGAACCCCATAGATTTTATCACACCCCAAAGCATTC- 2994214 Query 14027 AATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCT 14086 || || ||||| || | || || || || || ||| | || | ||||| || Sbjct 2994213 AACAGC---CTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCC 2994157 Query 14087 ATTAGTTTTACAGGA-ATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTT 14145 | ||| ||||| | || | ||||||| | ||||| |||| || | Sbjct 2994156 ACTAGAGC-ACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCT 2994098 Query 14146 TATAATAATCGTAATAATTTCATTAGAAGGAGGATAT--TTTAGATGTTTAAAAATTAAA 14203 || ||| | || ||| | || |||| | | |||||| | | | | | | Sbjct 2994097 TACTATATTTTGAACGCTTTGTTGAG--GGAGCTTGTGGTTTAGAAGATCATAGAGAAGG 2994040 Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| || | || |||||||| ||| ||||| || || || ||||| Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||| || || | |||||||| ||||||||| | | || || |||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 || || ||||| ||||| || || || | ||| |||| ||| | || Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATT---G 2993863 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||||||| ||||| || | |||||| || | | | ||||||| ||| | Sbjct 2993862 ATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTG 2993803 Query 14444 AATAAATGTTCCTTCT--CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || || | ||||| || | | |||| ||||| | |||| | | ||| |||| Sbjct 2993802 AACAATCGACTCTTCTCACTGGAATCCTTG--ATGTAAGATTCAAGCAAGAGGCTGTACA 2993745 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 | |||||||| |||||||| || || ||||| || ||||| ||| ||||| |||| Sbjct 2993744 TCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAA 2993685 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| ||||| |||| | || | |||||| |||||||||||| ||||| Sbjct 2993684 CTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTG 2993625 Query 14622 CAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCA 14679 |||| || || | | ||| || || |||| || || || |||| | ||| Sbjct 2993624 CAAAGAAAGCAAGGACATGGGTT--ATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCA 2993567 Query 14680 ATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCT 14737 | ||| || || | ||| ||||| || || ||| | ||||| ||| || | ||| Sbjct 2993566 GT--GCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCT 2993509 Query 14738 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778 || |||||||| |||| |||| |||| ||| ||||| Sbjct 2993508 TTCTTATACATCTCCCAAATTTGGGGATATTTTATGGGAAA 2993468 >seq557 Length=6368207 Score = 104 bits (114), Expect = 2e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| |||||||||||||| || ||||||||||| |||||||| || || || ||| Sbjct 1405745 AAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCGAGAAGGTT 1405804 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 ||||| |||||||| ||||| ||||| | |||||| || ||| Sbjct 1405805 AATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGCA 1405846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482310955527280